Parental gene:

TPM4, ENSBTAG00000004553

Aliases:None
Description:tropomyosin alpha-4 chain [Source:RefSeq peptide;Acc:NP_001094632]
Organism:Cow (Bos taurus)
Coordinates:7:7923142..7948265(-)


>ENSBTAG00000004553
ATGGAGGCCATCAAGAAGAAGATGCAGATGCTGAAGCTGGACAAGGAGAACGCCATCGACCGGGCCGAGCAGGCGGAGTC
GGATAAGAAAGCTGCCGAGGAGAAGTGCAAGCAGGTGGAGGAGGAACTAACCCACCTCCAGAAGAAGCTTAAGGAGACGG
AGGATGAGCTGGACAAATATTCCGAGAACCTGAAAGACGCGCAGGAAAAGCTGGAGCTGACAGAGAAGAAAGCCTCCGAC
GCCGAAGGTGATGTGGCAGCTCTCAATCGACGCATCCAGCTCGTTGAGGAGGAGTTGGACAGGGCTCAGGAACGACTGGC
CACAGCCCTGCAGAAGCTGGAGGAGGCAGAAAAGGCTGCAGATGAGAGTGAGAGAGGGATGAAGGTGATAGAAAACCGCG
CCATGAAAGATGAGGAGAAGATGGAGATTCAGGAGATGCAGCTTAAAGAGGCCAAGCACATCGCCGAGGAGGCTGACCGC
AAATACGAGGAGGTAGCTCGTAAATTGGTCATCCTGGAGGGTGAGCTAGAGAGGGCAGAGGAGCGTGCCGAGGTGTCCGA
ACTAAAATGTGGTGACCTGGAAGAAGAACTCAAGAATGTCACTAACAACCTGAAGTCACTAGAGGCTGCATCTGAAAAGT
ATTCTGAAAAGGAGGACAAATATGAAGAAGAAATTAAACTTCTGTCCGACAAACTGAAAGAGGCTGAGACCCGTGCCGAA
TTTGCAGAGAGAACAGTTGCAAAACTGGAAAAGACAATTGATGACCTGGAAGAAAAACTTGCCCAGGCCAAAGAAGAGAA
CGTGGGCTTACATCAGACACTGGATCAGACACTAAACGAACTAAACTGTATATAA

Library Parental gene expression (RPM)
ERP005899_liver 69 .86 RPM
ERP005899_muscle 190 .25 RPM
SRP017611_brain 40 .70 RPM
SRP017611_kidney 207 .51 RPM
SRP017611_liver 33 .98 RPM
SRP030211_testis 22 .75 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000033217 within_species_paralog 3 retrogenes
retro_btau_1166, retro_btau_210, retro_btau_933,
Canis familiaris ENSCAFG00000015796 ortholog_one2one 1 retrogene
retro_cfam_2107,
Callithrix jacchus ENSCJAG00000014135 possible_ortholog 1 retrogene
retro_cjac_206,
Gorilla gorilla ENSGGOG00000014510 ortholog_one2one 4 retrogenes
retro_ggor_1836, retro_ggor_2665, retro_ggor_2801, retro_ggor_609,
Monodelphis domestica ENSMODG00000014882 ortholog_one2one 1 retrogene
retro_mdom_1354,
Mus musculus ENSMUSG00000031799 ortholog_one2one 1 retrogene
retro_mmus_1625,
Nomascus leucogenys ENSNLEG00000005413 ortholog_one2one 2 retrogenes
retro_nleu_1952, retro_nleu_469,
Pan troglodytes ENSPTRG00000010637 ortholog_one2one 10 retrogenes
retro_ptro_1002, retro_ptro_1109, retro_ptro_1341, retro_ptro_1342, retro_ptro_1750, retro_ptro_1768, retro_ptro_2648, retro_ptro_2694, retro_ptro_2830, retro_ptro_516,
Pteropus vampyrus ENSPVAG00000009755 ortholog_one2one 2 retrogenes
retro_pvam_186, retro_pvam_187,
Ictidomys tridecemlineatus ENSSTOG00000024252 ortholog_one2one 1 retrogene
retro_itri_1858,
Tupaia belangeri ENSTBEG00000012927 ortholog_one2one 7 retrogenes
retro_tbel_1435, retro_tbel_2468, retro_tbel_3663, retro_tbel_3709, retro_tbel_3872, retro_tbel_4651, retro_tbel_482,
Tarsius syrichta ENSTSYG00000010642 ortholog_one2one 9 retrogenes
retro_tsyr_1377, retro_tsyr_1613, retro_tsyr_1642, retro_tsyr_1853, retro_tsyr_628, retro_tsyr_694, retro_tsyr_704, retro_tsyr_742, retro_tsyr_749,
Tursiops truncatus ENSTTRG00000014542 ortholog_one2one 2 retrogenes
retro_ttru_504, retro_ttru_839,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_1604 83.33 84.15
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2. retro_btau_1758 82.93 57.75
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Download FASTA sequences of all ENSBTAG00000004553 retrocopies