Parental gene:

TPM4, ENSCAFG00000015796

Aliases:None
Description:tropomyosin 4 [Source:HGNC Symbol;Acc:12013]
Organism:Dog (Canis familiaris)
Coordinates:20:46356185..46376425(-)


>ENSCAFG00000015796
ATGGAGGCCATCAAGAAGAAGATGCAGATGCTGAAGCTGGACAAGGAGAATGCCATCGACCGGGCCGAGCAGGCGGAGTC
GGATAAGAAAGCTGCGGAGGAAAAGTGCAAGCAGGTGGAAGAGGAGCTGACGCACCTCCAGAAGAAGCTGAAGGGGACGG
AGGATGAGCTGGACAAATACTCCGAGAACCTGAAGGACGCCCAGGAGAAGCTGGAGCTGACGGAGAAGAAAGCCTCCGAC
GCCGAAGGGGATGTAGCAGCTCTCAATCGACGCATCCAGCTGGTGGAGGAGGAGCTGGACAGGGCTCAGGAACGGCTGGC
CACAGCCCTGCAGAAGCTGGAAGAGGCAGAAAAGGCTGCGGATGAGAGCGAGAGAGGAATGAAGGTGATAGAAAACCGGG
CCATGAAAGATGAGGAGAAGATGGAGATTCAGGAGATGCAGCTCAAAGAGGCCAAGCACATCGCTGAGGAGGCCGACCGC
AAGTATGAGGAGGTGGCTCGTAAATTGGTCATCCTGGAAGGCGAGCTGGAGAGGGCGGAGGAGCGTGCCGAGGTGTCTGA
ACTTAAATGTGGTGACCTAGAAGAAGAACTCAAGAATGTCACTAACAATCTGAAGTCACTCGAGGCTGCATCTGAAAAGT
ATTCTGAAAAGGAGGATAAATATGAAGAAGAAATCAAACTTTTGTCCGACAAACTGAAAGAGGCTGAGACCCGTGCTGAA
TTTGCAGAGAGAACGGTTGCAAAACTGGAAAAGACAATTGATGACCTGGAAGAAAAACTTGCCCAGGCCAAGGAAGAGAA
TGTGGGCTTACATCAGACACTGGATCAGACACTAAACGAACTTAACTGTATATAA

Library Parental gene expression (RPM)
SRP012049_cerebellum 52 .79 RPM
SRP017611_brain 36 .52 RPM
SRP017611_kidney 37 .38 RPM
SRP017611_liver 14 .87 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000004553 ortholog_one2one 2 retrogenes
retro_btau_1604, retro_btau_1758,
Canis familiaris ENSCAFG00000016966 within_species_paralog 1 retrogene
retro_cfam_2167,
Canis familiaris ENSCAFG00000017311 within_species_paralog 4 retrogenes
retro_cfam_1278, retro_cfam_1678, retro_cfam_2089, retro_cfam_983,
Callithrix jacchus ENSCJAG00000014135 possible_ortholog 1 retrogene
retro_cjac_206,
Gorilla gorilla ENSGGOG00000014510 ortholog_one2one 4 retrogenes
retro_ggor_1836, retro_ggor_2665, retro_ggor_2801, retro_ggor_609,
Monodelphis domestica ENSMODG00000014882 ortholog_one2one 1 retrogene
retro_mdom_1354,
Mus musculus ENSMUSG00000031799 ortholog_one2one 1 retrogene
retro_mmus_1625,
Nomascus leucogenys ENSNLEG00000005413 ortholog_one2one 2 retrogenes
retro_nleu_1952, retro_nleu_469,
Pan troglodytes ENSPTRG00000010637 ortholog_one2one 10 retrogenes
retro_ptro_1002, retro_ptro_1109, retro_ptro_1341, retro_ptro_1342, retro_ptro_1750, retro_ptro_1768, retro_ptro_2648, retro_ptro_2694, retro_ptro_2830, retro_ptro_516,
Pteropus vampyrus ENSPVAG00000009755 ortholog_one2one 2 retrogenes
retro_pvam_186, retro_pvam_187,
Ictidomys tridecemlineatus ENSSTOG00000024252 ortholog_one2one 1 retrogene
retro_itri_1858,
Tupaia belangeri ENSTBEG00000012927 ortholog_one2one 7 retrogenes
retro_tbel_1435, retro_tbel_2468, retro_tbel_3663, retro_tbel_3709, retro_tbel_3872, retro_tbel_4651, retro_tbel_482,
Tarsius syrichta ENSTSYG00000010642 ortholog_one2one 9 retrogenes
retro_tsyr_1377, retro_tsyr_1613, retro_tsyr_1642, retro_tsyr_1853, retro_tsyr_628, retro_tsyr_694, retro_tsyr_704, retro_tsyr_742, retro_tsyr_749,
Tursiops truncatus ENSTTRG00000014542 ortholog_one2one 2 retrogenes
retro_ttru_504, retro_ttru_839,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_2107 76.47 59.86
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Download FASTA sequences of all ENSCAFG00000015796 retrocopies