Parental gene:

DDX43, ENSPTRG00000018344

Aliases:None
Description:DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [Source:HGNC Symbol;Acc:18677]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:6:73694890..73717795(+)


>ENSPTRG00000018344
ATGTCCCACCACGGAGGAGCTCCCAAGGCCTCTACGTGGGTCGTTGCTAGTCGGCGAAGCTCGACAGTGTCCCGAGCGCC
AGAGAGGAGGCCGGCGGAGGAGTTGAATCGAACAGGTCCTGAGGGATATAGTGTCGGCAGAGGTGGTCGCTGGAGAGGCC
CCTCTAGGCCCCCGGAGGCCGTGGCCGCTGGTCACGAGGAACTGCCGCTGTGTTTTGCTTTGAAGAGCCACTTTGTTGGC
GCGGTAATCGGTCGTGGTGGGTCAAAAATAAAGAATATACAAAGTACAACAAACACCACAATCCAAATAATACAAGAACA
ACCAGAATCATTAGTCAAAATTTTTGGCAGCAAGGCAATGCAAACGAAAGCAAAAGCAGTGATAGACAATTTTGTTAAAA
AACTAGAAGAAAATTACAATTCAGAATGCGGAGTTGATACTGCATTCCAACCTTCTGTTGGAAAAGATGGAAGCACAGAT
AACAATGTTGTTGCAGGAGATCGGCCATTGATAGATTGGGATCAAATTAGAGAAGAAGGTTTGAAATGGCAAAAAACAAA
GTGGGCAGATTTACCACCAATTAAGAAAAACTTTTATAAAGAGTCCACTGCCACAAGTGCCATGTCAAAAGTAGAAGCAG
ATAGTTGGAGGAAAGAAAATTTTAATATAACGTGGGATGACTTGAAGGATGGGGAGAAACGATCTATCCCCAATCCTACC
TGCACATTTGATGACGCCTTTCAATGTTATCCTGAGGTTATGGAAAACATTAAAAAGGCAGGTTTTCAAAAGCCAACACC
TATTCAGTCACAGGCATGGCCCATTGTGTTGCAAGGAATAGATCTTATAGGAGTAGCCCAGACTGGAACAGGAAAGACAT
TGTGTTATTTAATGCCTGGATTTATTCATCTGGTCCTTCAACCCAGCCTTAAAGGTCAAAAGAATAGACCCGGCATGTTA
GTTCTAACTCCCACTCGGGAATTAGCACTTCAAGTAGAAGGAGAATGTTGCAAATATTCATATAAAGGGCTTCGGAGTGT
TTGTGTATATGGTGGTGGAAATAGAGATGAACAAATAGAAGAGCTTAAAAAAGGTGTAGATATCATAATTGCAACTCCCG
GAAGATTGAATGATCTGCAAATGAGTAACTTCGTCAATCTGAAGAATATAACCTACTTGGTTTTAGATGAAGCAGACAAG
ATGTTGGACATGGGATTTGAACCCCAGATAATGAAGATTTTGTTAGATGTGCGCCCAGATAGGCAGACAGTTATGACCAC
TGCTACATGGCCTCATTCAGTTCATCGCCTCGCACAATCTTATTTGAAAGAACCAATGATTGTCTATGTTGGTACATTGG
ATCTAGTTGCTGTAAGTTCAGTGAAGCAAAATATAATTGTAACCACCGAGGAAGAGAAATGGAGTCACATGCAAACTTTT
CTACAGAATATGTCATCCACAGACAAAGTCATTGTCTTCGTTTCTCGAAAAGCTGTTGCGGATCACTTATCAAGTGACCT
AATACTTGGAAATATATCAGTAGAGTCTCTGCATGGAGATAGAGAACAGAGAGATCGGGAGAAAGCATTAGAGAACTTTA
AAACAGGCAAAGTGAGAATACTAATTGCAACTGATCTAGCCTCTAGAGGACTTGATGTCCATGACGTTACACATGTCTAT
AATTTTGACTTTCCACGGAATATTGAAGAATACGTACACCGAATAGGGCGCACAGGAAGAGCAGGGAGGACTGGTGTTTC
CATTACAACTTTGACTAGAAATGATTGGAGGGTTGCCTCTGAATTGATTAATATTCTGGAAAGAGCAAATCAGAGTATTC
CAGAGGAGCTTGTATCAATGGCTGAGAGGTTTAAGGCACATCAACAGAAAAGGGAAATGGAAAGAAAAATGGAAAGACCT
CAAGGAAGGCCCAAGAAGTTTCATTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 0 .02 RPM
SRP007412_cerebellum 0 .07 RPM
SRP007412_heart 0 .03 RPM
SRP007412_kidney 0 .00 RPM
SRP007412_liver 0 .29 RPM
SRP007412_testis 47 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000007851 ortholog_one2one 1 retrogene
retro_amel_31,
Callithrix jacchus ENSCJAG00000009966 ortholog_one2one 2 retrogenes
retro_cjac_3639, retro_cjac_3640,
Equus caballus ENSECAG00000017971 ortholog_one2one 1 retrogene
retro_ecab_7,
Felis catus ENSFCAG00000031631 ortholog_one2one 1 retrogene
retro_fcat_583,
Homo sapiens ENSG00000080007 ortholog_one2one 1 retrogene
retro_hsap_76,
Gorilla gorilla ENSGGOG00000016092 ortholog_one2one 1 retrogene
retro_ggor_2889,
Microcebus murinus ENSMICG00000017145 ortholog_one2one 1 retrogene
retro_mmur_1603,
Monodelphis domestica ENSMODG00000018546 ortholog_many2many 1 retrogene
retro_mdom_14,
Mustela putorius furo ENSMPUG00000004342 ortholog_one2one 1 retrogene
retro_mputfur_47,
Nomascus leucogenys ENSNLEG00000001209 ortholog_one2one 1 retrogene
retro_nleu_1094,
Oryctolagus cuniculus ENSOCUG00000006338 ortholog_one2many 2 retrogenes
retro_ocun_1061, retro_ocun_227,
Otolemur garnettii ENSOGAG00000013660 ortholog_one2one 1 retrogene
retro_ogar_227,
Procavia capensis ENSPCAG00000005962 ortholog_one2one 1 retrogene
retro_pcap_151,
Pongo abelii ENSPPYG00000016774 ortholog_one2one 1 retrogene
retro_pabe_39,
Pan troglodytes ENSPTRG00000002562 within_species_paralog 2 retrogenes
retro_ptro_1536, retro_ptro_1938,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_35 61.28 96.14
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Download FASTA sequences of all ENSPTRG00000018344 retrocopies