RetrogeneDB ID: | retro_ocun_1061 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 2:104921517..104922816(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000006338 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.8 % |
Parental protein coverage: | 67.29 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | TWRKENFNVMCDDLKEGEKRPVPNPTCSFEDAFETFPEVMKNIEKAGFKKPTPIQSQTWPIVLQGIDVIG |
T..K...NVMCD.L.E.EK.PV.NPTCS.E.AFETF.EVMKNIEKA.F.KPT.I.SQ.WP.VLQG.DVIG | |
Retrocopy | TQEKGKLNVMCDGLEEDEKHPVLNPTCSLEYAFETFSEVMKNIEKAEFIKPT*IPSQAWPVVLQGRDVIG |
Parental | VAQTGTGKTLSYLMPGFIHLDCQPVGREKRNGPGMLVLTPTRELALQVQAECSKYSYKNLRSVCIYGGG- |
VAQTGT.KTLSYLM..F.HLDCQPVGRE.RN.P.MLVLTPT.ELALQVQA.CSKYSY.NLRSV..Y.GG. | |
Retrocopy | VAQTGTRKTLSYLMLRFMHLDCQPVGREERNSPCMLVLTPTWELALQVQAKCSKYSYRNLRSVSVY-GG> |
Parental | DREAQIQDVSKGVDIVIATPGRLNDLQMNNFIRLKSVTYLVLDEADKMLDMGFEPQIM-KILLDVRPDRQ |
...AQIQ.VSKGVDI.I..PG.LN.LQ..NFIRLK..TYLVL.EA.KMLDM..EPQIM...LL...PDRQ | |
Retrocopy | ETDAQIQSVSKGVDIIITIPGKLNNLQTTNFIRLKTITYLVLAEANKMLDMESEPQIM<EFLLYMQPDRQ |
Parental | TIMTSATWPYGVRRLAQSYLKEPMLVYVGTLDLVAVSTVKQNIIITTEEEKRIHIQKFLENMSPKDKVIV |
.I.TSATW.YG..RLAQSYLKE.MLVYVG.LDLV...TVKQNIIITTEEEK..HIQKFLENMS.KDKV.V | |
Retrocopy | NIVTSATWTYGGHRLAQSYLKETMLVYVGNLDLVSLRTVKQNIIITTEEEKWMHIQKFLENMSLKDKVTV |
Parental | FVSRKIVADHLSSDLVLQHLSVESLHGNREQSDREKALKNFKTGKVRILIATDLASRGLDVHDITHVYNY |
F.SRK.V.DHLSSDL.L.H.S.ESLHGNRE..DREK.LK.FKTGKVRILIA.DLAS..L.VHDITHVY.Y | |
Retrocopy | FISRKAVVDHLSSDLDLRHMSLESLHGNRE*NDREKTLKDFKTGKVRILIANDLASGRLNVHDITHVYSY |
Parental | DFPRNIEEYVHRVGRTGRAGNTG-VSITLITRNDWRVAAELIHILERANQNIPEELVAMAERYNASKLKR |
.FPRNIEEYVHRVG.TGRA..TG.VSI...TRND.R.AAELIH.LERANQNI.E.LV.MAER.NAS.LKR | |
Retrocopy | NFPRNIEEYVHRVGHTGRARRTG<VSINSSTRNDLRIAAELIHFLERANQNILEVLVSMAERCNASTLKR |
Parental | EME-KKMGRPQAKPKKFY |
EME.KKMG.PQ.KPKKFY | |
Retrocopy | EME>KKMGQPQGKPKKFY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .51 RPM |
SRP017611_liver | 0 .00 RPM | 0 .08 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000007851 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000009966 | 2 retrocopies | |
Equus caballus | ENSECAG00000017971 | 1 retrocopy | |
Felis catus | ENSFCAG00000031631 | 1 retrocopy | |
Homo sapiens | ENSG00000080007 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000016092 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000017145 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000018546 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000004342 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001209 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000006338 | 2 retrocopies |
retro_ocun_1061 , retro_ocun_227,
|
Otolemur garnettii | ENSOGAG00000013660 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000005962 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016774 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000018344 | 1 retrocopy |