RetrogeneDB ID: retro_mputfur_47

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897042.1:3634212..3636048(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000019441
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: DDX43
• Ensembl ID: ENSMPUG00000004342
• Aliases: None
• Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [Source:HGNC Symbol;Acc:18677]

Sequence

>retro_mputfur_47
GGCGGTGGTGGCAGTGGAAGGGGCAGAAGTGGCAGAGGATGGAGCGGCCCCGCCGGCCACACAGAGGTGAGAGCCTCAGG
CCCCGGGGAGCCACCTCTCTGCTTTAGATTGAAGAACAATATGATTGGAGTGGTGATTGGTCGTGGTGGATCAAAGATAA
AAGATATCCAGGCTACAACAAGTACCAAAATACAGATCATAAAAGGTGATTGTGAAGCAGAGGTAAAAATTTTTGGCACA
AAGGACATGAAAGCAAAGGCCAAAGCAACTATAGATGCTCTTGTTAAAAAACAAGAACGAGGCCACCATTCAGAGTCCCG
CGTCGATAGTGCCGCACCTCAGGCCTCTGCTGGAAAAGAGCTCCGCCCAGATAACACTGGTGCTAAACAGGTTCAACCAC
TGATAGACTGGGACCAAATCAGAGCAGAAGTTGTAGAGTGGGAAAAAAGAAAATGGGCAGATTTACCACCAATTAAGAAA
AACTTCTATGTAGAATCTGAAGCAACGAGCTCGTTGTCTGAAGCTGAAGTAGATATGTGGAGAAAGGAAAACTTTGACAT
AATGTGTGACGACTTGAAAGATGGCCAAAAGCGCCCCATTCCCAACCCTACTTGGCAATTTGAGGATGCCTTCCATCCTT
ACCCTGAACTTATGAAAAGCATTAGACGAGCAGGTTTTCAAAAGCCAACACCCATTCAGTCACAGGCATGGCCAATTATT
CTAAAAGGAATAGATCTTATAGGAGTTGCTCAAACTGGAACAGGCAAAACATTGTCCTATTTAATGCCTGGGTTTATTCA
TCTCAATAATCAACCAATACCTAGAGAGGAAAGAAATGGGGCTGGCATGCTAGTCCTTACACCCACTAGAGAATTAGCTC
TTCAGGTGGAAGCTGAATGTTCTAAGTATTCATATAAAGGTCTTAAAAGTGTTTGTATATATGGCGGTGGAAGTAGAGAA
CGACAAATTCGAGATATTACCAAAGGCATAGATATCATTATTGCAACTCCTGGACGACTGAATGATCTGCAAATGAATAA
CTTTGTCAACTTACGAAGCATAACCTACTTAGTCTTAGATGAAGCAGATAAAATGCTAGATCTGGGGTTTGAACACCAGA
TAATGAAGATTTTATTAGATGTGCGCCCAGACCGCCAGACTATTATGACAAGTGCAACTTGGCCAGATACCATTCGTCGA
CTTGCTCAGTCTTACCTGAAACAACCTATGATTGTTTATGTTGGTACTCTGGATCTAGTTGCTGTTAATACAGTGAAGCA
AAATGTAATTGTTACCACAGAAGAAGAAAAACGATCTCTTATCCAAGAGTTCTTACAGGGTCTGTCACCCCACGACAAAG
TCATTGTGTTTGTCAGCAGAAAACTTGTTGCCGATGACTTATCAAGTGATTTGAGCATCCAGGGCATACCAGTGCAATCA
TTGCATGGCGACAGGGAGCAGCATGACCGTGAACGAGCACTGGAGGACTTTAGAAGTGGAAAAGTGAAAATACTGATTGC
TACTGATTTAGCATCCAGAGGTCTTGATGTCAATGATGTCACACACGTATATAATTATGACTTCCCACGCAATATTGAAG
AATATGTACACAGAGTGGGAAGAACAGGAAGAGCAGGGAGAACAGGCGTATCAGTCACCCTCATGACTCAGAATGATTGG
AAGATTGCCATTGAATTGATTAAAATTCTGAAACGAGCAAATCAGAGTGTCCCTGAAGATCTCCTAACAATGGCTGAGCG
ATTCAAAATGCACAAACAAAAAAAGGACACAGGAAAAAAACTGAAATCTCCAGGAAAACCCAGAGAATTTTACTGA

Alignment

ORF - retro_mputfur_47 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 72.5 %
• Parental protein coverage: 93.98 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GSEARRGGRGGGLKNSGLQQPVTAGLREPPLCFGLKNVWVGAVIGRGGSKIKDIQSTTNTKIQIIKGHSE
          GS...R.GRG......G.......G..EPPLCF.LKN...G.VIGRGGSKIKDIQ.TT.TKIQIIKG..E
Retrocopy GSGRGRSGRGWS-GPAGHTEVRASGPGEPPLCFRLKNNMIGVVIGRGGSKIKDIQATTSTKIQIIKGDCE

Parental  EAEVRIFGDKVMQVKAKTVIDNLVKKQEN-YSSKLRADVVAFQPSVGRDVKTDSNVTEN-QPLIDWDQIR
          .AEV.IFG.K.M..KAK..ID.LVKKQE....S..R.D..A.Q.S.G.....D.......QPLIDWDQIR
Retrocopy -AEVKIFGTKDMKAKAKATIDALVKKQERGHHSESRVDSAAPQASAGKELRPDNTGAKQVQPLIDWDQIR

Parental  EDALKWGRKKWEDLPPIKKNFYVESETTSSMSQVQIDTWRKENYNIMCDDLKEGEKRHIPNPTCKFEDAF
          .....W...KW.DLPPIKKNFYVESE.TSS.S....D.WRKEN..IMCDDLK.G.KR.IPNPT..FEDAF
Retrocopy AEVVEWEKRKWADLPPIKKNFYVESEATSSLSEAEVDMWRKENFDIMCDDLKDGQKRPIPNPTWQFEDAF

Parental  QCFPEVMENIKKAGFQKPTPIQSQSWPIVLQGIDLIGVAQTGTGKTLSYLMPGFIHLDSQPVIRGERNGP
          ...PE.M..I..AGFQKPTPIQSQ.WPI.L.GIDLIGVAQTGTGKTLSYLMPGFIHL..QP..R.ERNG.
Retrocopy HPYPELMKSIRRAGFQKPTPIQSQAWPIILKGIDLIGVAQTGTGKTLSYLMPGFIHLNNQPIPREERNGA

Parental  GMLVLTPTRELALQVESECSKYSYKGLKSVCIYGGGDRNGQIQDLKKGVDIIIATPGRLNDLQMNNFVNL
          GMLVLTPTRELALQVE.ECSKYSYKGLKSVCIYGGG.R..QI.D..KG.DIIIATPGRLNDLQMNNFVNL
Retrocopy GMLVLTPTRELALQVEAECSKYSYKGLKSVCIYGGGSRERQIRDITKGIDIIIATPGRLNDLQMNNFVNL

Parental  RSITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTIMTSATWPYAVRRLAQSYLKEPMIVYVGTLDLVA
          RSITYLVLDEADKMLD.GFE.QIMKILLDVRPDRQTIMTSATWP...RRLAQSYLK.PMIVYVGTLDLVA
Retrocopy RSITYLVLDEADKMLDLGFEHQIMKILLDVRPDRQTIMTSATWPDTIRRLAQSYLKQPMIVYVGTLDLVA

Parental  VSTVKQNIIVTTEEEKRSHIQTFLESMSPKDKVIVFVSRKAVADHLSSDLILRQVSVESLHGNREQSDRE
          V.TVKQN.IVTTEEEKRS.IQ.FL...SP.DKVIVFVSRK.VAD.LSSDL......V.SLHG.REQ.DRE
Retrocopy VNTVKQNVIVTTEEEKRSLIQEFLQGLSPHDKVIVFVSRKLVADDLSSDLSIQGIPVQSLHGDREQHDRE

Parental  RALENFKTGKVRILIATDLASRGLDVLDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGISITLLTRNDWR
          RALE.F..GKV.ILIATDLASRGLDV.D.THVYNYDFPRNIEEYVHRVGRTGRAGRTG.S.TL.T.NDW.
Retrocopy RALEDFRSGKVKILIATDLASRGLDVNDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSVTLMTQNDWK

Parental  VAGELINILERAQQSIPEDLVAMAKRYEANKLKKEMEKKMGKPQGKPQKFY
          .A.ELI.IL.RA.QS.PEDL..MA.R....K.KK...KK...P.GKP..FY
Retrocopy IAIELIKILKRANQSVPEDLLTMAERFKMHKQKKDTGKKLKSP-GKPREFY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_47 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_47 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 15 parental genes, and 17 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000007851	1 retrocopy	retro_amel_31,
Callithrix jacchus	ENSCJAG00000009966	2 retrocopies	retro_cjac_3639, retro_cjac_3640,
Equus caballus	ENSECAG00000017971	1 retrocopy	retro_ecab_7,
Felis catus	ENSFCAG00000031631	1 retrocopy	retro_fcat_583,
Homo sapiens	ENSG00000080007	1 retrocopy	retro_hsap_76,
Gorilla gorilla	ENSGGOG00000016092	1 retrocopy	retro_ggor_2889,
Microcebus murinus	ENSMICG00000017145	1 retrocopy	retro_mmur_1603,
Monodelphis domestica	ENSMODG00000018546	1 retrocopy	retro_mdom_14,
Mustela putorius furo	ENSMPUG00000004342	1 retrocopy	retro_mputfur_47 ,
Nomascus leucogenys	ENSNLEG00000001209	1 retrocopy	retro_nleu_1094,
Oryctolagus cuniculus	ENSOCUG00000006338	2 retrocopies	retro_ocun_1061, retro_ocun_227,
Otolemur garnettii	ENSOGAG00000013660	1 retrocopy	retro_ogar_227,
Procavia capensis	ENSPCAG00000005962	1 retrocopy	retro_pcap_151,
Pongo abelii	ENSPPYG00000016774	1 retrocopy	retro_pabe_39,
Pan troglodytes	ENSPTRG00000018344	1 retrocopy	retro_ptro_35,