Parental gene: | C9orf78, ENSPTRG00000021465 |
| Aliases: | None |
| Description: | chromosome 9 open reading frame 78 [Source:HGNC Symbol;Acc:24932] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 9:129039470..129047497(-) |
>ENSPTRG00000021465
ATGCCGGTCGTCCGGAAGATTTTCCGTCGCCGCCGGGGCGACTCGGAGTCAGAGGAAGATGAGCAGGACTCAGAGGAGGT
TCGATTAAAACTGGAAGAGACCAGAGAGGTACAGAACTTGAGGAAGAGGCCCAACGGGGTGAGTGCTGTGGCCTTGCTGG
TGGGAGAGAAGGTACAAGAGGAGACCACTCTAGTGGATGATCCCTTTCAGATGAAGACAGGTGGTATGGTGGATATGAAG
AAACTGAAGGAAAGGGGCAAAGATAAGATCAGTGAGGAGGAGGACCTGCACCTGGGGACATCGTTTTCTGCAGAAACCAA
CCGAAGGGATGAGGATGCAGACATGATGAAGTACATTGAGACAGAGCTAAAGAAGAGGAAAGGGATCGTGGAACATGAGG
AACAGAAAGTTAAGCCAAAGAATGCAGAGGACTGTCTTTATGAACTTCCAGAAAACATCCGCGTTTCCTCAGCAAAGAAG
ACCGAGGAGATGCTTTCCAACCAGATGCTGAGTGGCATTCCTGAGGTGGACCTGGGCATCGATGCTAAAATAAAAAATAT
CATTTCCACGGAGGATGCCAAGGCCCGTCTGCTGGCAGAGCAGCAGAACAAGAAGAAAGACAGCGAGACCTCCTTCGTGC
CTACCAACATGGCTGTGAATTACGTGCAGCACAACAGATTTTATCATGAGGAGCTCAACGCGCCCATACGGAGAAACAAA
GAAGAGCCCAAGGCCCGGCCCTTGAGAGTAGGCGACACGGAGAAGCCAGAGCCTGAGCGGTCCCCTCCTAACCGCAAGCG
TCCTGCTAACGAGAAGGCAACTGATGACTATCATTATGAGAAGTTCAAGAAAATGAATAGGCGGTACTGA
ATGCCGGTCGTCCGGAAGATTTTCCGTCGCCGCCGGGGCGACTCGGAGTCAGAGGAAGATGAGCAGGACTCAGAGGAGGT
TCGATTAAAACTGGAAGAGACCAGAGAGGTACAGAACTTGAGGAAGAGGCCCAACGGGGTGAGTGCTGTGGCCTTGCTGG
TGGGAGAGAAGGTACAAGAGGAGACCACTCTAGTGGATGATCCCTTTCAGATGAAGACAGGTGGTATGGTGGATATGAAG
AAACTGAAGGAAAGGGGCAAAGATAAGATCAGTGAGGAGGAGGACCTGCACCTGGGGACATCGTTTTCTGCAGAAACCAA
CCGAAGGGATGAGGATGCAGACATGATGAAGTACATTGAGACAGAGCTAAAGAAGAGGAAAGGGATCGTGGAACATGAGG
AACAGAAAGTTAAGCCAAAGAATGCAGAGGACTGTCTTTATGAACTTCCAGAAAACATCCGCGTTTCCTCAGCAAAGAAG
ACCGAGGAGATGCTTTCCAACCAGATGCTGAGTGGCATTCCTGAGGTGGACCTGGGCATCGATGCTAAAATAAAAAATAT
CATTTCCACGGAGGATGCCAAGGCCCGTCTGCTGGCAGAGCAGCAGAACAAGAAGAAAGACAGCGAGACCTCCTTCGTGC
CTACCAACATGGCTGTGAATTACGTGCAGCACAACAGATTTTATCATGAGGAGCTCAACGCGCCCATACGGAGAAACAAA
GAAGAGCCCAAGGCCCGGCCCTTGAGAGTAGGCGACACGGAGAAGCCAGAGCCTGAGCGGTCCCCTCCTAACCGCAAGCG
TCCTGCTAACGAGAAGGCAACTGATGACTATCATTATGAGAAGTTCAAGAAAATGAATAGGCGGTACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 39 .65 RPM |
| SRP007412_cerebellum | 76 .32 RPM |
| SRP007412_heart | 39 .43 RPM |
| SRP007412_kidney | 46 .29 RPM |
| SRP007412_liver | 37 .58 RPM |
| SRP007412_testis | 106 .33 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000019979 | possible_ortholog | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000013895 | ortholog_one2one | 3 retrogenes | |
| Callithrix jacchus | ENSCJAG00000020318 | ortholog_one2one | 3 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000019214 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000136819 | ortholog_one2one | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000013358 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000010524 | ortholog_one2many | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000003795 | ortholog_one2one | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000006832 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000017658 | ortholog_one2one | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000009770 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000019685 | ortholog_one2one | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000012313 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_258 | 54.27 | 67.82 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_1943 | 69.12 | 69.55 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_1969 | 75.60 | 72.32 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000021465 retrocopies