RetrogeneDB ID: | retro_hsap_2913 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 4:13978965..13979589(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000224569 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C9orf78 | ||
Ensembl ID: | ENSG00000136819 | ||
Aliases: | C9orf78, HCA59, HSPC220, bA409K20.3 | ||
Description: | chromosome 9 open reading frame 78 [Source:HGNC Symbol;Acc:24932] |
Percent Identity: | 77.03 % |
Parental protein coverage: | 72.32 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | DPFQMKTGGMVDMKKLKERGKDKISEEEDLHLGTSFSAETNRRDEDADMMKYIETELKKRKGIVEHEEQK |
DPFQMK.G..VDMKKLKE..KDKIS.EED.HLGTSFSAETN.RDEDADMMKY.ETELKKRKGIVEHEEQK | |
Retrocopy | DPFQMKIGD-VDMKKLKEKSKDKISKEEDFHLGTSFSAETN*RDEDADMMKYTETELKKRKGIVEHEEQK |
Parental | VKPKNAEDCLYELPENIRVSSAKKTEEMLSNQMLSGIPEVDLGIDAKIKNIISTEDAKARLLAEQQNKKK |
VKP.NAEDCLYELPENI..SSAKKT..M.SNQMLSGIPE.DLGI.A.IKNIIS.EDAK..LLAE.QNKKK | |
Retrocopy | VKPRNAEDCLYELPENIHISSAKKTKKMFSNQMLSGIPELDLGINARIKNIISSEDAKVHLLAE*QNKKK |
Parental | DSETSFVPTNMAVNYVQHNRFYHEELNAPIRRNKEEPKARPLRVGDTEKPEPERSPPNRKRPANEKATD |
DS..SF.PTNM.VNYVQ.NRFYHEELN.PI.RN.EEPK.R.LRVGDTEK............P.N.K..D | |
Retrocopy | DSKLSFMPTNMSVNYVQQNRFYHEELNVPIQRNTEEPKTRLLRVGDTEKLGDTEKAEAERSPPNHKHPD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 46 .77 RPM |
bodymap2_adrenal | 0 .00 RPM | 92 .83 RPM |
bodymap2_brain | 0 .00 RPM | 64 .67 RPM |
bodymap2_breast | 0 .00 RPM | 41 .17 RPM |
bodymap2_colon | 0 .00 RPM | 63 .50 RPM |
bodymap2_heart | 0 .00 RPM | 26 .09 RPM |
bodymap2_kidney | 0 .14 RPM | 57 .35 RPM |
bodymap2_liver | 0 .00 RPM | 33 .99 RPM |
bodymap2_lung | 0 .00 RPM | 49 .05 RPM |
bodymap2_lymph_node | 0 .00 RPM | 60 .83 RPM |
bodymap2_ovary | 0 .00 RPM | 48 .75 RPM |
bodymap2_prostate | 0 .00 RPM | 61 .69 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 53 .55 RPM |
bodymap2_testis | 0 .00 RPM | 75 .24 RPM |
bodymap2_thyroid | 0 .00 RPM | 73 .14 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 95 .39 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1969 |
Pongo abelii | retro_pabe_2426 |
Macaca mulatta | retro_mmul_1870 |
Callithrix jacchus | retro_cjac_2299 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000019979 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000013895 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000020318 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000019214 | 1 retrocopy | |
Homo sapiens | ENSG00000136819 | 3 retrocopies |
retro_hsap_2872, retro_hsap_2913 , retro_hsap_320,
|
Gorilla gorilla | ENSGGOG00000013358 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000010524 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000003795 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000006832 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017658 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000009770 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000019685 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000021465 | 3 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000012313 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |