Parental gene:

C9orf78, ENSPPYG00000019685

Aliases:None
Description:None
Organism:Orangutan (Pongo abelii)
Coordinates:9:126736198..126743899(-)


>ENSPPYG00000019685
TTAAAGATTAAACTGGAAGAGACCAGAGAGGTACAGAACTTGAGGAAGAGGCCCAACGGGCTCAGTGCTGTGGCCTTGCT
GGTGGGAGAGAAGGTACAAGAGGAGACCACTCTAGTGGATGATCCCTTTCAGATGAAGACAGGGGGTATGGTGGATATGA
AGAAACTGAAGGAAAGGGGCAAAGATAAGATCAGTGAGGAGGAGGACCTGCACCTGGGGACATCGTTTTCTGCAGAAACC
AATCGAAGGGATGAGGATGCAGACATGATGAAGTACATTGAGACAGAGCTAAAGAAGAGGAAAGGGATCGTGGAACATGA
GGAACAGAAAGTTAAGCCAAAGAATGCAGAGGACTGTCTTTATGAACTTCCAGAAAACATCCGTGTTTCCTCAGCAAAGA
AGACCGAGGAGATGCTTTCCAACCAGATGCTGAGTGGCATTCCTGAGGTGGACCTGGGCATCGATGCTAAAATAAAAAAT
ATCATTTCCACGGAGGATGCCAAGGCCCGTCTGCTGGCAGAGCAGCAGAACAAGAAGAAAGACAGCGAGACCTCCTTCGT
GCCTACCAACATGGCTGTGAATTACGTACAGCACAACAGATTTTATCATGAGGAGCTCAACGCGCCCATACGGAGAAACA
AAGAAGAGCCCAAGGCCCGGCCCTTGAGAGTAGGCGACACAGAGAAGCCAGAGCCTGAGCGGTCCCCTCCTAACCGCAAG
CGTCCTGCTAACGAGAAGGCAACTGATGACTATCATTATGAGAAGTTCAAGAAAATGAATAGGCGGTAC

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 75 .20 RPM
SRP007412_cerebellum 71 .99 RPM
SRP007412_heart 32 .78 RPM
SRP007412_kidney 113 .10 RPM
SRP007412_liver 61 .66 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000020307 possible_ortholog 1 retrogene
retro_btau_1138,
Canis familiaris ENSCAFG00000019979 possible_ortholog 1 retrogene
retro_cfam_116,
Choloepus hoffmanni ENSCHOG00000013895 ortholog_one2many 3 retrogenes
retro_chof_1103, retro_chof_1747, retro_chof_978,
Callithrix jacchus ENSCJAG00000020318 ortholog_one2one 3 retrogenes
retro_cjac_1757, retro_cjac_2299, retro_cjac_2778,
Cavia porcellus ENSCPOG00000009285 possible_ortholog 1 retrogene
retro_cpor_712,
Dasypus novemcinctus ENSDNOG00000019214 ortholog_one2one 1 retrogene
retro_dnov_1540,
Equus caballus ENSECAG00000018958 possible_ortholog 1 retrogene
retro_ecab_174,
Homo sapiens ENSG00000136819 ortholog_one2one 3 retrogenes
retro_hsap_2872, retro_hsap_2913, retro_hsap_320,
Gorilla gorilla ENSGGOG00000013358 ortholog_one2one 1 retrogene
retro_ggor_1990,
Macropus eugenii ENSMEUG00000010524 ortholog_many2many 3 retrogenes
retro_meug_1046, retro_meug_1241, retro_meug_508,
Microcebus murinus ENSMICG00000009596 possible_ortholog 1 retrogene
retro_mmur_1466,
Macaca mulatta ENSMMUG00000003795 ortholog_one2one 2 retrogenes
retro_mmul_1460, retro_mmul_1870,
Monodelphis domestica ENSMODG00000006832 ortholog_one2many 1 retrogene
retro_mdom_518,
Mus musculus ENSMUSG00000026851 possible_ortholog 1 retrogene
retro_mmus_2978,
Nomascus leucogenys ENSNLEG00000017658 ortholog_one2one 3 retrogenes
retro_nleu_1763, retro_nleu_614, retro_nleu_823,
Otolemur garnettii ENSOGAG00000009770 ortholog_one2one 1 retrogene
retro_ogar_1015,
Pan troglodytes ENSPTRG00000021465 ortholog_one2one 3 retrogenes
retro_ptro_1943, retro_ptro_1969, retro_ptro_258,
Sarcophilus harrisii ENSSHAG00000012313 ortholog_one2many 1 retrogene
retro_shar_746,
Ictidomys tridecemlineatus ENSSTOG00000020630 possible_ortholog 1 retrogene
retro_itri_1783,
Tupaia belangeri ENSTBEG00000013115 possible_ortholog 1 retrogene
retro_tbel_514,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_2426 72.93 86.69
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSPPYG00000019685 retrocopies