Parental gene: | Pkm, ENSRNOG00000011329 |
| Aliases: | Pkm, PKM12, Pk3, Pkm2 |
| Description: | Pyruvate kinase isozymes M1/M2 [Source:UniProtKB/Swiss-Prot;Acc:P11980] |
| Organism: | Rat (Rattus norvegicus) |
| Coordinates: | 8:64244178..64265969(+) |
>ENSRNOG00000011329
ATGCCCAAGCCAGACAGCGAAGCAGGGACTGCCTTCATTCAGACCCAGCAGCTCCATGCAGCCATGGCTGACACCTTCCT
GGAACACATGTGCCGCCTGGACATTGACTCCGCACCCATCACGGCCCGCAACACTGGGATCATCTGTACCATTGGCCCTG
CTTCCCGATCTGTGGAGATGCTGAAGGAGATGATTAAGTCTGGGATGAATGTGGCTCGGCTGAATTTCTCTCATGGAACC
CATGAGTACCATGCAGAGACTATCAAGAATGTCCGTGCAGCCACAGAAAGCTTTGCATCTGATCCCATTCTCTACCGACC
TGTTGCGGTGGCTCTGGATACAAAGGGACCTGAGATCCGGACTGGACTCATCAAGGGCAGCGGCACCGCAGAGGTGGAGC
TGAAGAAGGGAGCCACACTGAAGATCACCCTGGACAACGCCTACATGGAGAAGTGCGACGAGAACATCCTGTGGCTGGAC
TATAAGAACATCTGCAAGGTGGTGGAGGTGGGCAGCAAGATCTACGTGGACGATGGGCTCATCTCCCTGCAGGTGAAGGA
GAAAGGTGCTGACTACCTGGTGACAGAAGTGGAAAATGGTGGCTCCTTGGGCAGCAAGAAGGGCGTGAACCTGCCTGGTG
CTGCTGTGGACCTCCCTGCTGTGTCAGAAAAGGACATCCAGGACCTGAAGTTTGGGGTGGAGCAGGACGTGGACATGGTG
TTTGCGTCTTTCATCCGCAAGGCGGCTGACGTGCATGAGGTTAGGAAGGTCCTGGGAGAGAAGGGCAAGAACATCAAGAT
CATCAGCAAAATCGAGAACCATGAAGGTGTCCGCAGGTTTGATGAGATTTTGGAGGCCAGCGATGGAATCATGGTAGCTC
GTGGTGACCTGGGCATTGAGATTCCGGCAGAGAAGGTCTTCCTAGCTCAGAAGATGATGATTGGACGATGCAACCGAGCT
GGGAAGCCAGTCATCTGCGCCACCCAGATGCTGGAGAGCATGATCAAGAAGCCACGCCCCACCCGTGCTGAAGGCAGTGA
CGTGGCCAATGCAGTCCTAGATGGAGCTGACTGCATCATGCTGTCCGGAGAAACAGCCAAAGGGGACTACCCTCTGGAGG
CTGTTCGCATGCAGCACCTGATTGCCCGAGAGGCAGAGGCTGCCATCTACCACTTGCAGTTATTCGAGGAACTCCGCCGC
CTGGCGCCCATTACCAGCGACCCCACAGAAGCTGCCGCCGTGGGTGCCGTGGAGGCCTCCTTCAAGTGCTGCAGTGGGGC
CATTATCGTGCTCACCAAGTCTGGCAGGAGTGCTCACCAAGTGGCCCGGTACCGCCCAAGGGCTCCTATCATTGCTGTGA
CACGCAATCCCCAGACAGCCCGCCAGGCCCATCTGTACCGTGGCATCTTCCCTGTGCTGTGTAAGGATGCCGTACTGGAT
GCCTGGGCTGAGGACGTTGATCTTCGTGTGAACTTGGCCATGAATGTTGGCAAGGCCCGAGGCTTCTTCAAGAAGGGAGA
TGTGGTCATTGTGCTGACTGGATGGCGCCCTGGCTCTGGCTTCACCAACACCATGCGTGTAGTGCCTGTACCATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 402 .69 RPM |
| SRP017611_kidney | 89 .60 RPM |
| SRP017611_liver | 3 .56 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000013504 | ortholog_one2many | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000018473 | possible_ortholog | 1 retrogene | |
| Felis catus | ENSFCAG00000000653 | possible_ortholog | 1 retrogene | |
| Homo sapiens | ENSG00000067225 | possible_ortholog | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000005062 | possible_ortholog | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000004506 | ortholog_one2many | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000023454 | ortholog_many2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000032294 | ortholog_one2many | 8 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000013869 | possible_ortholog | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000006613 | ortholog_one2many | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000007246 | possible_ortholog | 2 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000010300 | ortholog_many2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_rnor_515 | 92.16 | 69.30 | Please wait, loading  |
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| 2. | retro_rnor_830 | 81.91 | 52.92 | Please wait, loading |
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| 3. | retro_rnor_1120 | 88.41 | 100.00 | Please wait, loading |
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| 4. | retro_rnor_2050 | 82.14 | 78.53 | Please wait, loading |
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| 5. | retro_rnor_2253 | 82.48 | 51.22 | Please wait, loading |
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| 6. | retro_rnor_2703 | 84.97 | 64.78 | Please wait, loading |
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Download FASTA sequences of all ENSRNOG00000011329 retrocopies