RetrogeneDB ID: | retro_pabe_2834 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 6:6156642..6157517(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PKM2 | ||
Ensembl ID: | ENSPPYG00000006613 | ||
Aliases: | PKM2, PKM | ||
Description: | pyruvate kinase isozyme M1 [Source:RefSeq peptide;Acc:NP_001127083] |
Percent Identity: | 81.97 % |
Parental protein coverage: | 55.18 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MSKPHSEAGTAFIQTQQLHAAMADTFLEHMCRLDIDSPPITARNTGIICTIGPASRSVETLKEMIKSGMN |
M.KPHSEA..AFIQTQQLHAAMADTFLE.MC.LD.DSPPITA..TGIICT.GPAS.S.E.LK..IKSGMN | |
Retrocopy | MLKPHSEARAAFIQTQQLHAAMADTFLEYMCCLDTDSPPITAWSTGIICTMGPASPSLEMLKKTIKSGMN |
Parental | VARLNFSHGTHEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPEIRTGLIKGSGTAEVELKKGATL |
VA.LN.SHGT.EYH.ETIKNVRTA.ESFASD.ILY.P.AVALDTKGPEI.TG.IKGSGTAEVELKKG.TL | |
Retrocopy | VAHLN-SHGTQEYHTETIKNVRTAMESFASDSILYQPIAVALDTKGPEIPTGPIKGSGTAEVELKKGVTL |
Parental | KITLDNAYMEKCD-ENILWLDYKNICKVVEVGSKIYVDDGLISLQVKQKGADFLLTEVENGGSLGSKKGV |
K.TLDN.YMEKC..ENIL.LDYKNIC.VVEVG.KIYVDDGLISLQVKQK.ADFL.TEV.NGGSLGSKK.V | |
Retrocopy | KFTLDNTYMEKCK<ENILRLDYKNICNVVEVGCKIYVDDGLISLQVKQKDADFLVTEVQNGGSLGSKKDV |
Parental | NLPGAAVDLPAVSEKDIQDLKFGVEQDVDMVFASFIRKASDVHEVRKVLGEKGKNIKIISKIENHEGVRR |
NLPGAAVDLPA..EKDIQDLKFG..QDV...F.SFI.K.SDVHEVRK.LGEKGKNIKIIS..E.H.G..R | |
Retrocopy | NLPGAAVDLPAMLEKDIQDLKFGGKQDVNTMFSSFICKTSDVHEVRKILGEKGKNIKIISFNESHDGDWR |
Parental | FDEILEASDGIMVA |
FDEILEASDGIMVA | |
Retrocopy | FDEILEASDGIMVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 1056 .99 RPM |
SRP007412_cerebellum | 0 .00 RPM | 584 .42 RPM |
SRP007412_heart | 0 .00 RPM | 414 .49 RPM |
SRP007412_kidney | 0 .00 RPM | 391 .89 RPM |
SRP007412_liver | 0 .00 RPM | 70 .17 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013504 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000018473 | 1 retrocopy | |
Felis catus | ENSFCAG00000000653 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000005062 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000004506 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000023454 | 1 retrocopy | |
Mus musculus | ENSMUSG00000032294 | 8 retrocopies | |
Pongo abelii | ENSPPYG00000006613 | 3 retrocopies |
retro_pabe_2834 , retro_pabe_3645, retro_pabe_429,
|
Rattus norvegicus | ENSRNOG00000011329 | 6 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000010300 | 1 retrocopy |