RetrogeneDB ID: | retro_meug_1482 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold42146:16199..17372(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PKM | ||
Ensembl ID: | ENSMEUG00000004506 | ||
Aliases: | None | ||
Description: | pyruvate kinase, muscle [Source:HGNC Symbol;Acc:9021] |
Percent Identity: | 92.07 % |
Parental protein coverage: | 75.44 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | YHAETIKNVRTATESFASSPVHYRPIAIALDTKGPEIRTGLIKGSGTAEVELKKGNTLKVTLDEAYMEKC |
YHAETIKNVRTATESFASSPVHY.PIAIALDTKGPEIRTG.IKGSGTAEVELKKGNTLKVTLDEAYMEKC | |
Retrocopy | YHAETIKNVRTATESFASSPVHY*PIAIALDTKGPEIRTGFIKGSGTAEVELKKGNTLKVTLDEAYMEKC |
Parental | DENVLWLDYKNICKVVDVGSKVFVDDGLISLLVKEKGANYLITEVENGGMLGSKKGVNLPGAAVDLPAVS |
DENVLWLDYKNICKVVDVGSKVFVDDGLISLLVKEKGAN.LITEVENGGMLGSKKGVNLPGAAVDLPAVS | |
Retrocopy | DENVLWLDYKNICKVVDVGSKVFVDDGLISLLVKEKGANFLITEVENGGMLGSKKGVNLPGAAVDLPAVS |
Parental | QKDIQDLHFGLEQGVDMVFASFIRKADDVHAVRKVLGEKGKNIKIISKIENHEGVRRFDEILEASDGIMV |
QKDIQDLHFGLEQGVDMVFASFIRKADDVHAVRKVLGEKGKNIKIISKIENHEGVRRFDEILEA...I.V | |
Retrocopy | QKDIQDLHFGLEQGVDMVFASFIRKADDVHAVRKVLGEKGKNIKIISKIENHEGVRRFDEILEANEDIVV |
Parental | ARGDLGIEIPAEKVFVAQKMMIGRCNRAGKPVICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIMLS |
ARGDLGIEIPAEKVFVAQKMMIGRCNRAGKPVICATQMLESMIKKPRPT.AEGSDVAN.VLDGADCIMLS | |
Retrocopy | ARGDLGIEIPAEKVFVAQKMMIGRCNRAGKPVICATQMLESMIKKPRPTQAEGSDVANDVLDGADCIMLS |
Parental | GETAKGDYPVEAVRMQHLIAREAEAAIYHRPLFESLLRCSSCT-DTADAMAVGAVEASYKCLSPALIVLT |
GETAKGDYPVEA.RMQHLIAREAEA.I.H..LFE.L.R....T.D...A.AVGAV.AS.KC.S.A.IVLT | |
Retrocopy | GETAKGDYPVEAMRMQHLIAREAEATIFHTQLFEELRRLAPVTKDPTEAAAVGAVDASFKCCSGAIIVLT |
Parental | ESGRSAYQVARYRPRAPIIAVTRSAQAARQAHLHRGVFPVL |
.SGRSAYQVARYRPRAPIIAVTRSAQAARQAHLHRGVFPVL | |
Retrocopy | KSGRSAYQVARYRPRAPIIAVTRSAQAARQAHLHRGVFPVL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013504 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000018473 | 1 retrocopy | |
Felis catus | ENSFCAG00000000653 | 1 retrocopy | |
Homo sapiens | ENSG00000067225 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000005062 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000004506 | 3 retrocopies |
retro_meug_1482 , retro_meug_2043, retro_meug_912,
|
Macaca mulatta | ENSMMUG00000023454 | 1 retrocopy | |
Mus musculus | ENSMUSG00000032294 | 8 retrocopies | |
Nomascus leucogenys | ENSNLEG00000013869 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000006613 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000007246 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000011329 | 6 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000010300 | 1 retrocopy |