Parental gene:

Map1lc3b, ENSRNOG00000017905

Aliases:Map1lc3b, Map1lc3, Mpl3, zbs559
Description:Microtubule-associated proteins 1A/1B light chain 3B [Source:UniProtKB/Swiss-Prot;Acc:Q62625]
Organism:Rat (Rattus norvegicus)
Coordinates:19:64367213..64383493(+)


>ENSRNOG00000017905
ATGGCTAATAGATGCTCGACCAGCGAGTGCCCAGCGCAGCCGGCGCAGGCGCAGGCGCAGGCGCAGGACCAAGTCTTGGA
CGCTTGTACGCATGCGGGCCGCCGAGCTTCCGCCACGCCTGTCATGGCCTCTCTCCGGGCCGCTCTCGGCCCCACCCTCG
CTGATGCGCCAAAGCTTGGTACAGTGTTGAAAATGAAGATTAGACTGGCTGAAGAGCTCCCGACACGGGAGGAGTTCAAG
GTCATCCTTAGCTGCCAAGCCGTGAGACAGGAGAGCCTGTCGCTAACAAGCAGTGGGAAGCAGGCGTTCTCAGAAGAACG
CAAACAAAGAGTGGAAGATGTCCGGCTCATCCGGGAGCAGCACCCCACCAAGATCCCAGTAGGTTCTACAGCAATGGTGC
TTCTGGGCAGAGGGGACCCCAGCCCCATTAGAGCCCCAGAAGCCCTTGGGCCTACAGACTTTGTGTGCCCACTAACCACT
GCCTCTCAACCTGAGCTGCTCTTGGGATGTCAAAGGGGAAAGGGCAGGGCTGGGACCTGCTCACAGCCTGTCTCAGGACA
GCCCTCCAGTGTCCCCATGCTTCTGGTGTTGTGGAAGAATGCCTTGGACCTGCTAGCCTCCTTCTCTACTCCGTTCTCTC
GAGAGTCCGCCTCGACCCAGGTGATTATAGAGCGATACAAGGGTGAGAAGCAGCTGCCCGTCCTGGACAAGACCAAGTTC
CTTGTACCTGATCACGTGAATATGAGCGAACTCATCAAGATAATTAGAAGGCGCCTGCAGCTCAATGCTAACCAAGCCTT
CTTCCTCCTGGTGAATGGGCACAGCATGGTGAGTGTGTCCACACCCATCTCTGAAGTGTACGAGAGCGAGAGAGATGAAG
ACGGCTTCCTGTACATGGTCTATGCCTCCCAGGAGACGTTCGGGACAGCACTGGCTGTCACCCACCCTCCCTGCATGCAG
CTGTCCCTGCTAACCCCCAATGTTATGTTACACTGTGTAAATCCCCACTGCTGCCGTGTGTGGGTTGTGTACGTCGTCAT
GTCCCTGGTTTATAACTATGCCGGCTTCACAGAGATGCCACACCACACAAGCGCTTCCAAAGGCAGCCGGCGGCTTCCAG
ACACAGACATCTGCTGCCTGGACAGCTGCAATGAATGGTGCTGGAGCTCGCTCACCTCCTCAATGCCACAAGGTAACGTG
GAATTGCCACAGCAGATCAACAGCCGTAAGACACTGCATTCCCTATACTGA

Library Parental gene expression (RPM)
SRP017611_brain 148 .18 RPM
SRP017611_kidney 140 .82 RPM
SRP017611_liver 67 .37 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000018254 ortholog_one2one 2 retrogenes
retro_amel_1660, retro_amel_873,
Bos taurus ENSBTAG00000011632 ortholog_one2one 1 retrogene
retro_btau_977,
Canis familiaris ENSCAFG00000019909 ortholog_one2one 1 retrogene
retro_cfam_1578,
Choloepus hoffmanni ENSCHOG00000012090 ortholog_one2one 7 retrogenes
retro_chof_146, retro_chof_2230, retro_chof_2274, retro_chof_2432, retro_chof_510, retro_chof_558, retro_chof_960,
Callithrix jacchus ENSCJAG00000004473 ortholog_one2one 3 retrogenes
retro_cjac_1114, retro_cjac_1519, retro_cjac_779,
Cavia porcellus ENSCPOG00000023922 ortholog_one2one 1 retrogene
retro_cpor_394,
Dasypus novemcinctus ENSDNOG00000010228 ortholog_one2one 7 retrogenes
retro_dnov_1008, retro_dnov_1024, retro_dnov_1335, retro_dnov_165, retro_dnov_2435, retro_dnov_2604, retro_dnov_913,
Dipodomys ordii ENSDORG00000013862 ortholog_one2one 1 retrogene
retro_dord_376,
Echinops telfairi ENSETEG00000015189 ortholog_one2many 2 retrogenes
retro_etel_1050, retro_etel_3,
Felis catus ENSFCAG00000001938 ortholog_one2one 4 retrogenes
retro_fcat_1727, retro_fcat_1874, retro_fcat_340, retro_fcat_884,
Homo sapiens ENSG00000140941 ortholog_one2many 3 retrogenes
retro_hsap_3695, retro_hsap_487, retro_hsap_62,
Loxodonta africana ENSLAFG00000023364 ortholog_one2one 3 retrogenes
retro_lafr_1077, retro_lafr_915, retro_lafr_974,
Microcebus murinus ENSMICG00000007356 ortholog_one2one 2 retrogenes
retro_mmur_117, retro_mmur_507,
Myotis lucifugus ENSMLUG00000015596 ortholog_one2many 1 retrogene
retro_mluc_1586,
Macaca mulatta ENSMMUG00000017613 ortholog_one2many 1 retrogene
retro_mmul_15,
Mus musculus ENSMUSG00000031812 ortholog_one2many 4 retrogenes
retro_mmus_1271, retro_mmus_2384, retro_mmus_2619, retro_mmus_846,
Nomascus leucogenys ENSNLEG00000011511 ortholog_one2one 4 retrogenes
retro_nleu_1032, retro_nleu_1467, retro_nleu_2392, retro_nleu_931,
Oryctolagus cuniculus ENSOCUG00000022970 ortholog_one2one 4 retrogenes
retro_ocun_1155, retro_ocun_572, retro_ocun_731, retro_ocun_784,
Otolemur garnettii ENSOGAG00000004256 ortholog_one2one 3 retrogenes
retro_ogar_1468, retro_ogar_2885, retro_ogar_2892,
Ochotona princeps ENSOPRG00000015461 ortholog_one2one 4 retrogenes
retro_opri_1136, retro_opri_369, retro_opri_85, retro_opri_977,
Pongo abelii ENSPPYG00000007628 ortholog_one2one 7 retrogenes
retro_pabe_1280, retro_pabe_1566, retro_pabe_245, retro_pabe_3157, retro_pabe_3158, retro_pabe_940, retro_pabe_978,
Pan troglodytes ENSPTRG00000008445 ortholog_one2many 3 retrogenes
retro_ptro_2505, retro_ptro_367, retro_ptro_63,
Pteropus vampyrus ENSPVAG00000016858 ortholog_one2one 1 retrogene
retro_pvam_728,
Rattus norvegicus ENSRNOG00000017417 within_species_paralog 2 retrogenes
retro_rnor_1818, retro_rnor_2093,
Rattus norvegicus ENSRNOG00000019425 within_species_paralog 1 retrogene
retro_rnor_57,
Sarcophilus harrisii ENSSHAG00000017074 ortholog_one2one 1 retrogene
retro_shar_168,
Sus scrofa ENSSSCG00000002655 ortholog_one2one 2 retrogenes
retro_sscr_188, retro_sscr_737,
Ictidomys tridecemlineatus ENSSTOG00000014826 ortholog_one2one 2 retrogenes
retro_itri_1505, retro_itri_662,
Tupaia belangeri ENSTBEG00000001165 ortholog_one2one 11 retrogenes
retro_tbel_1008, retro_tbel_1644, retro_tbel_2020, retro_tbel_2484, retro_tbel_2561, retro_tbel_3181, retro_tbel_3301, retro_tbel_636, retro_tbel_706, retro_tbel_733, retro_tbel_990,
Tursiops truncatus ENSTTRG00000008821 ortholog_one2one 2 retrogenes
retro_ttru_1336, retro_ttru_1454,
Vicugna pacos ENSVPAG00000010065 ortholog_one2one 2 retrogenes
retro_vpac_169, retro_vpac_186,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_1240 99.19 99.20
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2. retro_rnor_1739 51.02 76.80
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3. retro_rnor_1865 83.61 96.80
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4. retro_rnor_1868 83.61 96.80
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5. retro_rnor_2033 72.04 74.40
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Download FASTA sequences of all ENSRNOG00000017905 retrocopies