Parental gene: | ENSPPYG00000007628 |
| Aliases: | None |
| Description: | None |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 16:75110442..75122146(+) |
>ENSPPYG00000007628
ATGCCGTCGGAGAAGACTTTCAAGCAGCGCCGCACCTTCGAACAAAGAGTAGAAGATGTCCGACTTATTCGAGAGCAGCA
TCCTACCAAAATCCCGGTGATAATAGAACGATACAAGGGTGAGAAGCAGCTTCCTGTCCTGGATAAAACGAAGTTCCTTG
TACCTGACCATGTCAACATGAGTGAGCTCATCAAGATAATTAGAAGGCGCTTACAGCTCAATGCTAATCAGGCCTTCTTC
CTGTTGGTGAACGGACACAGCATGGTCAGCGTCTCCACACCAATCTCAGAGGTGTATGAGAGTGAGAAAGATGAAGATGG
ATTCCTGTACATGGTCTATGCCTCCCAGGAGACATTCGGGATGAAATTGTTTTGTCTGAGTTCAAACTAG
ATGCCGTCGGAGAAGACTTTCAAGCAGCGCCGCACCTTCGAACAAAGAGTAGAAGATGTCCGACTTATTCGAGAGCAGCA
TCCTACCAAAATCCCGGTGATAATAGAACGATACAAGGGTGAGAAGCAGCTTCCTGTCCTGGATAAAACGAAGTTCCTTG
TACCTGACCATGTCAACATGAGTGAGCTCATCAAGATAATTAGAAGGCGCTTACAGCTCAATGCTAATCAGGCCTTCTTC
CTGTTGGTGAACGGACACAGCATGGTCAGCGTCTCCACACCAATCTCAGAGGTGTATGAGAGTGAGAAAGATGAAGATGG
ATTCCTGTACATGGTCTATGCCTCCCAGGAGACATTCGGGATGAAATTGTTTTGTCTGAGTTCAAACTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 35 .77 RPM |
| SRP007412_cerebellum | 40 .01 RPM |
| SRP007412_heart | 27 .42 RPM |
| SRP007412_kidney | 16 .84 RPM |
| SRP007412_liver | 16 .28 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000018254 | ortholog_one2one | 2 retrogenes | |
| Bos taurus | ENSBTAG00000011632 | ortholog_one2one | 1 retrogene | |
| Canis familiaris | ENSCAFG00000019909 | ortholog_one2one | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000012090 | ortholog_one2one | 7 retrogenes | |
| Callithrix jacchus | ENSCJAG00000004473 | ortholog_one2one | 3 retrogenes | |
| Cavia porcellus | ENSCPOG00000023922 | ortholog_one2one | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000010228 | ortholog_one2one | 7 retrogenes | |
| Dipodomys ordii | ENSDORG00000013862 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000015189 | ortholog_one2many | 2 retrogenes | |
| Felis catus | ENSFCAG00000001938 | ortholog_one2one | 4 retrogenes | |
| Homo sapiens | ENSG00000140941 | ortholog_one2many | 3 retrogenes | |
| Loxodonta africana | ENSLAFG00000023364 | ortholog_one2one | 3 retrogenes | |
| Microcebus murinus | ENSMICG00000007356 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000015596 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000017613 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000031812 | ortholog_one2many | 4 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000011511 | ortholog_one2one | 4 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000022970 | ortholog_one2one | 4 retrogenes | |
| Otolemur garnettii | ENSOGAG00000004256 | ortholog_one2one | 3 retrogenes | |
| Ochotona princeps | ENSOPRG00000015461 | ortholog_one2one | 4 retrogenes | |
| Pongo abelii | ENSPPYG00000007565 | within_species_paralog | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000007901 | within_species_paralog | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000008445 | ortholog_one2many | 3 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000016858 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000017905 | ortholog_one2one | 5 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000017074 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000002655 | ortholog_one2one | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000014826 | ortholog_one2one | 2 retrogenes | |
| Tupaia belangeri | ENSTBEG00000001165 | ortholog_one2one | 11 retrogenes | |
| Tursiops truncatus | ENSTTRG00000008821 | ortholog_one2one | 2 retrogenes | |
| Vicugna pacos | ENSVPAG00000010065 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_245 | 64.86 | 84.50 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_940 | 85.22 | 89.15 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_978 | 85.22 | 89.15 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_pabe_1280 | 74.51 | 79.07 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_pabe_1566 | 63.89 | 82.17 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_pabe_3157 | 66.10 | 89.92 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_pabe_3158 | 65.17 | 67.44 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000007628 retrocopies