Parental gene:

Tma7, ENSRNOG00000042689

Aliases:None
Description:coiled-coil domain-containing protein 72 [Source:RefSeq peptide;Acc:NP_001119520]
Organism:Rat (Rattus norvegicus)
Coordinates:8:117790719..117795408(-)


>ENSRNOG00000042689
ATGTCGGGCCGCGAAGGTGGCAAAAAGAAGCCCCTGAAACAGCCCAAGAAGCAGGCCAAGGAGATGGACGAGGAAGATAA
GGCTTTCAAGCAGAAACAAAAGGAGGAACAGAAGAAACTCGAGGAGCTAAAAGCCAAGGCCGCGGGGAAGGGTCCCCTGG
CTACAGGTGGAATTAAGAAATCTGGCAAAAAGTAA

Library Parental gene expression (RPM)
SRP017611_brain 8 .12 RPM
SRP017611_kidney 4 .05 RPM
SRP017611_liver 2 .49 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001193 ortholog_one2many 6 retrogenes
retro_amel_1070, retro_amel_1643, retro_amel_270, retro_amel_503, retro_amel_826, retro_amel_879,
Callithrix jacchus ENSCJAG00000002871 ortholog_one2many 18 retrogenes
retro_cjac_1370, retro_cjac_1449, retro_cjac_1504, retro_cjac_1667, retro_cjac_1670, retro_cjac_1704, retro_cjac_1918, retro_cjac_2092, retro_cjac_2258, retro_cjac_2422, retro_cjac_2629, retro_cjac_2673, retro_cjac_2692, retro_cjac_2799, retro_cjac_3651, retro_cjac_536, retro_cjac_81, retro_cjac_849,
Felis catus ENSFCAG00000026902 ortholog_many2many 5 retrogenes
retro_fcat_138, retro_fcat_1630, retro_fcat_173, retro_fcat_57, retro_fcat_630,
Homo sapiens ENSG00000232112 possible_ortholog 11 retrogenes
retro_hsap_131, retro_hsap_154, retro_hsap_2151, retro_hsap_2561, retro_hsap_2888, retro_hsap_2934, retro_hsap_3115, retro_hsap_3402, retro_hsap_3736, retro_hsap_3852, retro_hsap_3964,
Gorilla gorilla ENSGGOG00000028044 ortholog_many2many 3 retrogenes
retro_ggor_11, retro_ggor_2002, retro_ggor_209,
Mus musculus ENSMUSG00000091537 ortholog_one2many 11 retrogenes
retro_mmus_1216, retro_mmus_1582, retro_mmus_1632, retro_mmus_2117, retro_mmus_2189, retro_mmus_2222, retro_mmus_2545, retro_mmus_2975, retro_mmus_3235, retro_mmus_389, retro_mmus_412,
Pan troglodytes ENSPTRG00000041769 ortholog_one2many 9 retrogenes
retro_ptro_136, retro_ptro_1492, retro_ptro_150, retro_ptro_1638, retro_ptro_1953, retro_ptro_1976, retro_ptro_2312, retro_ptro_2535, retro_ptro_2691,
Rattus norvegicus ENSRNOG00000047225 within_species_paralog 1 retrogene
retro_rnor_1709,
Sus scrofa ENSSSCG00000011351 ortholog_one2many 6 retrogenes
retro_sscr_133, retro_sscr_19, retro_sscr_299, retro_sscr_541, retro_sscr_735, retro_sscr_910,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_316 93.75 100.00
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2. retro_rnor_894 77.27 100.00
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Download FASTA sequences of all ENSRNOG00000042689 retrocopies