RetrogeneDB ID: | retro_ggor_2002 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 3:180683895..180684084(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CCDC72 | ||
Ensembl ID: | ENSGGOG00000028044 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.94 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MSGREGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKKSGKK |
MS.R.GGKK.PLKQPK.QAKEMDEEDKAFKQKQKEEQK.LEELK.KA..KGPL.TGGIKKSGKK | |
Retrocopy | MSSR*GGKK-PLKQPKRQAKEMDEEDKAFKQKQKEEQKELEELKVKARKKGPLDTGGIKKSGKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 60 .52 RPM |
SRP007412_cerebellum | 0 .00 RPM | 56 .54 RPM |
SRP007412_heart | 0 .00 RPM | 29 .96 RPM |
SRP007412_kidney | 0 .00 RPM | 70 .41 RPM |
SRP007412_liver | 0 .00 RPM | 40 .52 RPM |
SRP007412_testis | 0 .00 RPM | 62 .89 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001193 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000002871 | 18 retrocopies |
retro_cjac_1370, retro_cjac_1449, retro_cjac_1504, retro_cjac_1667, retro_cjac_1670, retro_cjac_1704, retro_cjac_1918, retro_cjac_2092, retro_cjac_2258, retro_cjac_2422, retro_cjac_2629, retro_cjac_2673, retro_cjac_2692, retro_cjac_2799, retro_cjac_3651, retro_cjac_536, retro_cjac_81, retro_cjac_849,
|
Felis catus | ENSFCAG00000026902 | 5 retrocopies | |
Homo sapiens | ENSG00000232112 | 11 retrocopies | |
Gorilla gorilla | ENSGGOG00000028044 | 3 retrocopies |
retro_ggor_11, retro_ggor_2002 , retro_ggor_209,
|
Mus musculus | ENSMUSG00000091537 | 11 retrocopies | |
Pan troglodytes | ENSPTRG00000041769 | 9 retrocopies | |
Rattus norvegicus | ENSRNOG00000042689 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000047225 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000011351 | 6 retrocopies |