Parental gene:

PSME2, ENSSSCG00000002004

Aliases:None
Description:proteasome activator complex subunit 2 [Source:RefSeq peptide;Acc:NP_999444]
Organism:Pig (Sus scrofa)
Coordinates:7:80425839..80429278(+)


>ENSSSCG00000002004
ATGGCCAAGCCTTGTGGGGTGCGCCTGAGCGGGGAAGCCCGCAAACAGGTGGATGTCTTCAGGCAAAATCTTTTCCAGGA
GGCTGAGGAATTCCTCTACAGATTTTTGCCTCAGAAAATCATATACCTGAGTCAGCTCTTGCAAGAGGACTCCCTCAACG
TGACCGACCTCACTTCTCTCCGGGCCCCGCTGGACATCCCCATCCCAGACCCCCCACCCAAGGATGATGAGATGGAAACA
GATAAGCAGGAGAAGAAAGAAGGTAAGAGGGGAAGGGGGGAGGTTAGGGAAAGAGTCCCTAAGTGTGGCTTTCTCCCTGG
GAACGAGAAGATCCTGGCCTTGCTTGGCCTGGTTAAGCCAGAAGTCTGGACTCTCAAAGAAAAATGCATTCTGGTGATCA
CATGGATCCAGCACCTGATCCCCAAAATTGAGGATGGAAATGACTTTGGGGTGGCAGTCCAGGAAAAGGTGCTGGAGAGG
GTAAATGCAGTCAAGACCAAAGTAGAAGCCTTCCAGACCACCATTTCCAAGTACTTCTCAGAACGTGGGGATGCTGTGGC
CAAGGCCTCCAAGGAGACCCATGTAATGGATTACCGGGCCCTGGTGCACGAACGAGATGAGGCAGCCCATGGGGAGCTCA
GGGCCATGGTGCTGGACCTGAGGGCCTTCTATGCTGAGCTTTACCATATTATCAGCAGCAACCTGGAGAAAATTGTCAAC
CCAAAGGGTGAAGAAAAGCCATCAATGTACTGA

Library Parental gene expression (RPM)
SRP014902_placenta 9 .42 RPM
SRP014902_testis 29 .28 RPM
SRP018288_heart 34 .26 RPM
SRP018288_kidney 39 .60 RPM
SRP018288_liver 45 .25 RPM
SRP018288_lung 80 .14 RPM
SRP018856_adipose 75 .15 RPM
SRP035408_brain 12 .10 RPM
SRP035408_liver 53 .78 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000007167 possible_ortholog 3 retrogenes
retro_cjac_233, retro_cjac_322, retro_cjac_71,
Felis catus ENSFCAG00000005585 ortholog_one2one 1 retrogene
retro_fcat_1605,
Myotis lucifugus ENSMLUG00000009769 ortholog_one2one 1 retrogene
retro_mluc_2172,
Mus musculus ENSMUSG00000079197 possible_ortholog 1 retrogene
retro_mmus_145,
Otolemur garnettii ENSOGAG00000016584 possible_ortholog 1 retrogene
retro_ogar_61,
Sus scrofa ENSSSCG00000017385 within_species_paralog 1 retrogene
retro_sscr_784,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_302 75.97 61.60
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Download FASTA sequences of all ENSSSCG00000002004 retrocopies