RetrogeneDB ID: | retro_cjac_233 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | X:17917365..17918082(+) | ||
Located in intron of: | ENSCJAG00000005449 | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000022320 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000007167 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 91.21 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAKPCGVRLSGEARKQVEVFRQNLFQEAEEFLYRFLPQKIIYLNQLLQEDSLNVADLTSLRATLDIPIPD |
..KPCGV.LS.E..KQVEVFRQNLFQEAEEFL.RFLPQKIIYLNQLLQEDSLNVADLTSLRATLDIPIPD | |
Retrocopy | ITKPCGVHLSREVLKQVEVFRQNLFQEAEEFLHRFLPQKIIYLNQLLQEDSLNVADLTSLRATLDIPIPD |
Parental | PPPKDDEMETDKQEKKEVPKCGFLPGNEKVLSLLALVKPEVWTLKEKCILLITWIQHLIPKIEDGNDFGV |
PPPKDDEMETDKQ.KKE.PKCGFLP.NE.VLSLLALVK.EVWT.KEKCIL.ITWIQHLIPKIEDGNDFGV | |
Retrocopy | PPPKDDEMETDKQKKKEIPKCGFLPENE-VLSLLALVKSEVWTPKEKCILVITWIQHLIPKIEDGNDFGV |
Parental | AIQEKVLERVNAVKTKVEAFQTTISKYFSERGDAVAKASKETHVMDYRALVHERDEAAYGELRAMVLDLR |
AIQEKVLERVNAVKTKVEAFQTTISKYFSE.GD.VAKASKETHVMDY.A.VHERDEAAYGELRAMVLDL. | |
Retrocopy | AIQEKVLERVNAVKTKVEAFQTTISKYFSEHGDVVAKASKETHVMDYWASVHERDEAAYGELRAMVLDLK |
Parental | AFYAELYHIISSNLEKIVNPKGEEKPSMY |
AFYAELYHIISSN.EK.VNPKGEEKPSMY | |
Retrocopy | AFYAELYHIISSNPEKTVNPKGEEKPSMY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .20 RPM | 22 .41 RPM |
SRP051959_heart | 0 .28 RPM | 11 .65 RPM |
SRP051959_kidney | 0 .20 RPM | 22 .45 RPM |
SRP051959_liver | 0 .11 RPM | 26 .30 RPM |
SRP051959_lung | 0 .70 RPM | 21 .57 RPM |
SRP051959_lymph_node | 1 .05 RPM | 37 .97 RPM |
SRP051959_skeletal_muscle | 0 .07 RPM | 6 .51 RPM |
SRP051959_spleen | 0 .95 RPM | 39 .83 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000007167 | 3 retrocopies |
retro_cjac_233 , retro_cjac_322, retro_cjac_71,
|
Callithrix jacchus | ENSCJAG00000013111 | 1 retrocopy | |
Felis catus | ENSFCAG00000005585 | 1 retrocopy | |
Homo sapiens | ENSG00000100911 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000016025 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000009769 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012473 | 4 retrocopies | |
Mus musculus | ENSMUSG00000079197 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015260 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000016584 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005684 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000006196 | 4 retrocopies | |
Sus scrofa | ENSSSCG00000002004 | 1 retrocopy |