RetrogeneDB ID:

retro_ogar_61

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873649.1:2907113..2907833(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000032570
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000016584
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_61
ATGGCCAAATCTTGTGGAGTGCGCCTGAGTGGGGAGGCCCTCAAGAAGGTGGATGTCTTCAGGCAAAATCTTTTCCAGGA
GGCTGAGGAGTTCCTCTACAGATTCTTGCCACAGAAAATCATATACCTGAACCAGCTCTTGCAAGATGACTCCTTCAATG
TGGCTGACCTGACCTCTCTCCGGGCTCCACTGGATATCCCCATCCCAGACCCTCCACCCAAGGATGATGAGATGGAAACA
GATAAGCAGGAGAAGAAAGAAGTCCCTAAGTGTGGATTTCTCCCTGGGAATGAGAAAGTCTTGTCCCTGCTTGCCCTGGT
TAAGCCAGAAGTCTGGACTCTCAAAGAGAAGTGCATTCTGGTGATCACATGGATCCAGCACCTGATCCCTAAGATTGAGG
ATGGAAATGATTTTGGGGTAGCAATCCAGGAGAAGGTACTGGAGAGGGTGAATGCAGTTAAGACCAAAGTGGAAGCCTTC
CAGACAACCATTTCCAAGTACTTCTCAGAACGTGGGGATGCTGTGGCTAAGGCCTCCAAGGAGACCCATGTAATGGATTA
CCGAGCCTTGGTGCACGAGCGAGATGAGGCAGTGTATGGGGAGCTTAGGGCCATGGTGCTGGGCCTGAGGGCCTTCTATG
CTGAGCTCTATCATATCATCATCAGCAACCTGGAGAAAATTATCAATCCAAAAGGCGAAGAGAAGCCATCTATGTACTGA

ORF - retro_ogar_61 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 97.13 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMAKSCGVRLSGEALKKVDVFRQNLFQEAEEFLYRFLPQKIIYLNQLLQDDSFNVADLTSLRAPLDIPIPD
MAKSCGVRLSGEALKKVDVFRQNLFQEAEEFLYRFLPQKIIYLNQLLQDDSFNVADLTSLRAPLDIPIPD
RetrocopyMAKSCGVRLSGEALKKVDVFRQNLFQEAEEFLYRFLPQKIIYLNQLLQDDSFNVADLTSLRAPLDIPIPD
ParentalPPPKDDEMETDKQEKKEGKEERVPKCGFLPGNEKVLSLLALVKPEVWTLKEKCILVITWIQHLIPKIEDG
PPPKDDEMETD...K.E.KE..VPKCGFLPGNEKVLSLLALVKPEVWTLKEKCILVITWIQHLIPKIEDG
RetrocopyPPPKDDEMETD---KQEKKE--VPKCGFLPGNEKVLSLLALVKPEVWTLKEKCILVITWIQHLIPKIEDG
ParentalNDFGVAIQEKVLERVNAVKTKVEAFQTTISKYFSERGDAVAKASKETHVMDYRALVHERDEAVYGELRAM
NDFGVAIQEKVLERVNAVKTKVEAFQTTISKYFSERGDAVAKASKETHVMDYRALVHERDEAVYGELRAM
RetrocopyNDFGVAIQEKVLERVNAVKTKVEAFQTTISKYFSERGDAVAKASKETHVMDYRALVHERDEAVYGELRAM
ParentalVLGLRAFYAELYHIIISNLEKIINPKGEEKPSMY
VLGLRAFYAELYHIIISNLEKIINPKGEEKPSMY
RetrocopyVLGLRAFYAELYHIIISNLEKIINPKGEEKPSMY

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_61 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 12 parental genes, and 32 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000071673 retrocopies
Felis catus ENSFCAG000000055851 retrocopy
Homo sapiens ENSG000001009114 retrocopies
Gorilla gorilla ENSGGOG000000160254 retrocopies
Myotis lucifugus ENSMLUG000000097691 retrocopy
Macaca mulatta ENSMMUG000000124734 retrocopies
Mus musculus ENSMUSG000000791971 retrocopy
Nomascus leucogenys ENSNLEG000000152604 retrocopies
Otolemur garnettii ENSOGAG00000016584 1 retrocopy
retro_ogar_61 ,
Pongo abelii ENSPPYG000000056844 retrocopies
Pan troglodytes ENSPTRG000000061964 retrocopies
Sus scrofa ENSSSCG000000020041 retrocopy



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