RetrogeneDB ID: | retro_cjac_322 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 8:6245729..6246449(+) | ||
Located in intron of: | ENSCJAG00000012658 | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000022801 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000007167 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 96.65 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAKPCGVRLSGEARKQVEVFRQNLFQEAEEFLYRFLPQKIIYLNQLLQEDSLNVADLTSLRATLDIPIPD |
MAKPCGVRLSGEARKQVEVFRQNLFQEAEEFLYRFLPQKIIYLNQLL.EDSL.VADLTSLRAT.DIPIPD | |
Retrocopy | MAKPCGVRLSGEARKQVEVFRQNLFQEAEEFLYRFLPQKIIYLNQLLKEDSLSVADLTSLRATMDIPIPD |
Parental | PPPKDDEMETDKQEKKEVPKCGFLPGNEKVLSLLALVKPEVWTLKEKCILLITWIQHLIPKIEDGNDFGV |
PP.KDDEMETDKQEKKEVP.CGFLPGNEKVLSL.ALVKPEVWTLKEKCIL.ITWIQHLIPKIEDGNDFGV | |
Retrocopy | PPSKDDEMETDKQEKKEVPTCGFLPGNEKVLSLPALVKPEVWTLKEKCILVITWIQHLIPKIEDGNDFGV |
Parental | AIQEKVLERVNAVKTKVEAFQTTISKYFSERGDAVAKASKETHVMDYRALVHERDEAAYGELRAMVLDLR |
AIQEKVLERVNAVKTKVEAFQTTISKYFSERGDAVAKASKETHVMDYRALVH.RDEAAYGELRAMVLDLR | |
Retrocopy | AIQEKVLERVNAVKTKVEAFQTTISKYFSERGDAVAKASKETHVMDYRALVHKRDEAAYGELRAMVLDLR |
Parental | AFYAELYHIISSNLEKIVNPKGEEKPSMY |
AFYAELYHIISSNLEKIVNPKGEEKPSMY | |
Retrocopy | AFYAELYHIISSNLEKIVNPKGEEKPSMY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .04 RPM | 22 .41 RPM |
SRP051959_heart | 0 .07 RPM | 11 .65 RPM |
SRP051959_kidney | 0 .04 RPM | 22 .45 RPM |
SRP051959_liver | 0 .04 RPM | 26 .30 RPM |
SRP051959_lung | 0 .03 RPM | 21 .57 RPM |
SRP051959_lymph_node | 0 .09 RPM | 37 .97 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 6 .51 RPM |
SRP051959_spleen | 0 .13 RPM | 39 .83 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000007167 | 3 retrocopies |
retro_cjac_233, retro_cjac_322 , retro_cjac_71,
|
Callithrix jacchus | ENSCJAG00000013111 | 1 retrocopy | |
Felis catus | ENSFCAG00000005585 | 1 retrocopy | |
Homo sapiens | ENSG00000100911 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000016025 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000009769 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012473 | 4 retrocopies | |
Mus musculus | ENSMUSG00000079197 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015260 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000016584 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005684 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000006196 | 4 retrocopies | |
Sus scrofa | ENSSSCG00000002004 | 1 retrocopy |