Parental gene:

C14orf2, ENSSSCG00000002550

Aliases:None
Description:chromosome 14 open reading frame 2 [Source:HGNC Symbol;Acc:1188]
Organism:Pig (Sus scrofa)
Coordinates:7:131028039..131033988(-)


>ENSSSCG00000002550
ATGCTTCAGAGCCTTATCAAGAACGTTTGGATCCCCTTGAAGCCCTACTACACCCAAGTTTACCAGGAGATTTGGGTAGG
AATGGGGTTGATGGGATTCATCGTCTATAAAATCAGGAGTGCTGATAAAAGAAGTAAAGCCTTGAAAGCTTCCAGTCCTG
CTCCTGCTCATGGCCACCACTAA

Library Parental gene expression (RPM)
SRP014902_placenta 111 .49 RPM
SRP014902_testis 42 .43 RPM
SRP018288_heart 121 .35 RPM
SRP018288_kidney 131 .50 RPM
SRP018288_liver 65 .08 RPM
SRP018288_lung 14 .05 RPM
SRP018856_adipose 73 .77 RPM
SRP035408_brain 61 .36 RPM
SRP035408_liver 70 .63 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000026886 ortholog_one2one 4 retrogenes
retro_btau_1496, retro_btau_1629, retro_btau_818, retro_btau_925,
Homo sapiens ENSG00000156411 ortholog_one2one 1 retrogene
retro_hsap_3993,
Mustela putorius furo ENSMPUG00000002297 ortholog_one2one 9 retrogenes
retro_mputfur_1068, retro_mputfur_1180, retro_mputfur_1395, retro_mputfur_1456, retro_mputfur_1500, retro_mputfur_1635, retro_mputfur_243, retro_mputfur_432, retro_mputfur_981,
Nomascus leucogenys ENSNLEG00000016248 ortholog_one2one 1 retrogene
retro_nleu_542,
Pan troglodytes ENSPTRG00000006764 ortholog_one2one 1 retrogene
retro_ptro_2710,
Pteropus vampyrus ENSPVAG00000011548 ortholog_one2one 3 retrogenes
retro_pvam_39, retro_pvam_504, retro_pvam_938,
Rattus norvegicus ENSRNOG00000043144 possible_ortholog 2 retrogenes
retro_rnor_116, retro_rnor_14,
Tupaia belangeri ENSTBEG00000008996 ortholog_one2one 3 retrogenes
retro_tbel_1138, retro_tbel_3782, retro_tbel_3854,
Tursiops truncatus ENSTTRG00000006404 ortholog_one2one 5 retrogenes
retro_ttru_1417, retro_ttru_1457, retro_ttru_1722, retro_ttru_1924, retro_ttru_271,
Vicugna pacos ENSVPAG00000001249 ortholog_one2one 7 retrogenes
retro_vpac_152, retro_vpac_347, retro_vpac_517, retro_vpac_526, retro_vpac_545, retro_vpac_577, retro_vpac_610,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_151 79.25 86.67
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2. retro_sscr_483 75.00 93.33
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3. retro_sscr_484 75.00 93.33
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4. retro_sscr_517 90.00 100.00
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5. retro_sscr_732 68.85 100.00
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Download FASTA sequences of all ENSSSCG00000002550 retrocopies