RetrogeneDB ID: | retro_hsap_3993 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 8:103166738..103166948(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000254492 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C14orf2 | ||
Ensembl ID: | ENSG00000156411 | ||
Aliases: | C14orf2, MP68, PLPM | ||
Description: | chromosome 14 open reading frame 2 [Source:HGNC Symbol;Acc:1188] |
Percent Identity: | 61.43 % |
Parental protein coverage: | 93.33 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | GTRGSDISHFQCQMLQSIIKNIWIPMKPYYTKVYQEIWIGMGLMGFIVYKIRAADKRSKALKASAPAPGH |
G.R.S....F...M.QSIIKN.WIPMKP.YT...QEIW.GMGL...I.YKIR.ADKRSKA.KA...A..H | |
Retrocopy | GLRCSLSCWFCTEMFQSIIKNVWIPMKPSYTQACQEIWVGMGLISIIAYKIRSADKRSKA*KALSLASAH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 31 .57 RPM |
bodymap2_adrenal | 0 .00 RPM | 46 .55 RPM |
bodymap2_brain | 0 .00 RPM | 95 .96 RPM |
bodymap2_breast | 0 .00 RPM | 43 .74 RPM |
bodymap2_colon | 0 .00 RPM | 61 .51 RPM |
bodymap2_heart | 0 .00 RPM | 118 .83 RPM |
bodymap2_kidney | 0 .00 RPM | 74 .68 RPM |
bodymap2_liver | 0 .00 RPM | 46 .79 RPM |
bodymap2_lung | 0 .00 RPM | 36 .48 RPM |
bodymap2_lymph_node | 0 .00 RPM | 45 .74 RPM |
bodymap2_ovary | 0 .00 RPM | 37 .30 RPM |
bodymap2_prostate | 0 .00 RPM | 50 .42 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 41 .03 RPM |
bodymap2_testis | 0 .00 RPM | 60 .07 RPM |
bodymap2_thyroid | 0 .00 RPM | 51 .54 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 67 .69 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2710 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000026886 | 4 retrocopies | |
Homo sapiens | ENSG00000156411 | 1 retrocopy |
retro_hsap_3993 ,
|
Mustela putorius furo | ENSMPUG00000002297 | 9 retrocopies | |
Nomascus leucogenys | ENSNLEG00000016248 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000006764 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000011548 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000043144 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000002550 | 5 retrocopies | |
Tupaia belangeri | ENSTBEG00000008996 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000006404 | 5 retrocopies | |
Vicugna pacos | ENSVPAG00000001249 | 7 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .05 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .06 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .11 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .02 RPM |
GBR_HG00131 | 0 .03 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .02 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .03 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .03 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |