Parental gene:

RBPMS2, ENSSSCG00000004549

Aliases:None
Description:RNA binding protein with multiple splicing 2 [Source:HGNC Symbol;Acc:19098]
Organism:Pig (Sus scrofa)
Coordinates:1:118116557..118128074(+)


>ENSSSCG00000004549
TTCTGTCAGCTTGGCCCTGACCACTGTGGTCTCTGTCCCCAGGTCCGGACACTGTTTGTCAGTGGCCTCCCTGTGGACAT
CAAACCCAGAGAACTCTACCTGCTCTTCAGGCCATTCAAGGGGTATGAAGGGTCCCTGATCAAGCTCACATCGAGACAGC
CTGTTGGTTTTGTGATCTTTGACAGCCGGGCAGGAGCAGAAGCAGCCAAGAATGCGTTGAATGGTATTCGCTTTGATCCT
GAGAACCCGCAGACCCTGAGGCTAGAGTTTGCCAAAGCCAACACCAAGATGGCCAAGAATAAGCTAATGGCTACACCAAA
TCCTACCAACACTCACCCCGCCCTAGGAGCACACTTCATCGCTCGGGACCCCTATGACCTGATGGGGGCCGCTCTGATCC
CTGCATCCCCCGAGGCTTGGGCCCCCTACCCTCTGTACACCACAGAGCTGACCCCAGTAATCTCACATGCTGCATTCACA
TACCCAGCTGCCACTGCTGCTGCCGCCGCCACCCTCCATACTCAGGTGCGCTGGTACCCTTCCTCTGATACCACCCAGCA
AGGATGGAAATATCGCCAGTTCTGTTAG

Library Parental gene expression (RPM)
SRP014902_placenta 0 .66 RPM
SRP014902_testis 9 .19 RPM
SRP018288_heart 49 .03 RPM
SRP018288_kidney 28 .47 RPM
SRP018288_liver 6 .56 RPM
SRP018288_lung 11 .20 RPM
SRP018856_adipose 19 .20 RPM
SRP035408_brain 2 .16 RPM
SRP035408_liver 7 .16 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000011037 ortholog_one2one 1 retrogene
retro_btau_1674,
Callithrix jacchus ENSCJAG00000005200 ortholog_one2many 2 retrogenes
retro_cjac_1775, retro_cjac_298,
Dipodomys ordii ENSDORG00000004025 ortholog_one2one 1 retrogene
retro_dord_438,
Homo sapiens ENSG00000166831 ortholog_one2one 2 retrogenes
retro_hsap_2513, retro_hsap_3613,
Gorilla gorilla ENSGGOG00000008984 ortholog_one2one 1 retrogene
retro_ggor_2438,
Loxodonta africana ENSLAFG00000018725 ortholog_one2one 6 retrogenes
retro_lafr_344, retro_lafr_393, retro_lafr_445, retro_lafr_481, retro_lafr_550, retro_lafr_859,
Macaca mulatta ENSMMUG00000013270 ortholog_one2one 1 retrogene
retro_mmul_1837,
Monodelphis domestica ENSMODG00000010487 ortholog_one2one 1 retrogene
retro_mdom_571,
Mus musculus ENSMUSG00000032387 ortholog_one2one 9 retrogenes
retro_mmus_2671, retro_mmus_3408, retro_mmus_3410, retro_mmus_3429, retro_mmus_3431, retro_mmus_3437, retro_mmus_3562, retro_mmus_3588, retro_mmus_3596,
Nomascus leucogenys ENSNLEG00000012505 ortholog_one2one 1 retrogene
retro_nleu_2209,
Otolemur garnettii ENSOGAG00000026017 ortholog_one2one 1 retrogene
retro_ogar_3254,
Pongo abelii ENSPPYG00000006553 ortholog_one2one 1 retrogene
retro_pabe_2963,
Pan troglodytes ENSPTRG00000007165 ortholog_one2one 2 retrogenes
retro_ptro_1458, retro_ptro_2441,
Ictidomys tridecemlineatus ENSSTOG00000010055 ortholog_one2one 2 retrogenes
retro_itri_1512, retro_itri_556,
Tarsius syrichta ENSTSYG00000008996 ortholog_one2one 3 retrogenes
retro_tsyr_1433, retro_tsyr_171, retro_tsyr_445,
Tursiops truncatus ENSTTRG00000011840 ortholog_one2one 3 retrogenes
retro_ttru_1046, retro_ttru_1212, retro_ttru_1790,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_851 60.25 80.00
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Download FASTA sequences of all ENSSSCG00000004549 retrocopies