Parental gene:

ENSCJAG00000005200

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:10:7069402..7078093(-)


>ENSCJAG00000005200
CAGGTCCGGACACTGTTTGTCAGCGGCCTCCCTGTGGACATTAAACCCAGAGAACTGTACTTGCTCTTCCGGCCGTTCAA
GGGGTATGAAGGGTCCCTGATCAAGCTCACCGCGAGACAGCCTGTTGGTTTTGTGATCTTTGACAGCCGGGCAGGAGCAG
AAGCAGCCAAGAACGCGTTGAACGGTATTCGCTTCGATCCTGAGAACCCACAGACGCTGAGGCTAGAGTTTGCCAAAGCC
AACACCAAGATGGCCAAGAGCAAGCTGATGGCGACTCCAAATCCCAGCAACATGCACCCCGCCCTAGGAGCACACTTGAT
TGCACGGGACCCCTATGACCTGATGGGGGCTGCTCTGATCCCTGCATCCCCAGAGGCCTGGGCCCCCTACCCTTTGTACA
CCACAGAGCTGACCCCAGCCATCTCCCATGCTGCGTTCACCTACCCAGCTGCCACTGCCGCCGCCGCCGCCCTCCATGCT
CAGTGCTTCCGTGAAGGCTGGACACCGTCCACTATGAACCTGTGCTGGGCAGGAAGCAGGGAGCGAATGCTTCTGGGGAG
AGTC

Library Parental gene expression (RPM)
SRP051959_colon 1 .71 RPM
SRP051959_heart 4 .24 RPM
SRP051959_kidney 0 .69 RPM
SRP051959_liver 0 .22 RPM
SRP051959_lung 1 .29 RPM
SRP051959_lymph_node 0 .57 RPM
SRP051959_skeletal_muscle 0 .66 RPM
SRP051959_spleen 0 .59 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000011037 ortholog_one2many 1 retrogene
retro_btau_1674,
Callithrix jacchus ENSCJAG00000012366 within_species_paralog 1 retrogene
retro_cjac_2705,
Dipodomys ordii ENSDORG00000004025 ortholog_one2many 1 retrogene
retro_dord_438,
Homo sapiens ENSG00000166831 ortholog_one2many 2 retrogenes
retro_hsap_2513, retro_hsap_3613,
Gorilla gorilla ENSGGOG00000008984 ortholog_one2many 1 retrogene
retro_ggor_2438,
Loxodonta africana ENSLAFG00000018725 ortholog_one2many 6 retrogenes
retro_lafr_344, retro_lafr_393, retro_lafr_445, retro_lafr_481, retro_lafr_550, retro_lafr_859,
Macaca mulatta ENSMMUG00000013270 ortholog_one2many 1 retrogene
retro_mmul_1837,
Monodelphis domestica ENSMODG00000010487 ortholog_one2many 1 retrogene
retro_mdom_571,
Mus musculus ENSMUSG00000032387 ortholog_one2many 9 retrogenes
retro_mmus_2671, retro_mmus_3408, retro_mmus_3410, retro_mmus_3429, retro_mmus_3431, retro_mmus_3437, retro_mmus_3562, retro_mmus_3588, retro_mmus_3596,
Nomascus leucogenys ENSNLEG00000012505 ortholog_one2many 1 retrogene
retro_nleu_2209,
Otolemur garnettii ENSOGAG00000026017 ortholog_one2many 1 retrogene
retro_ogar_3254,
Pongo abelii ENSPPYG00000006553 ortholog_one2many 1 retrogene
retro_pabe_2963,
Pan troglodytes ENSPTRG00000007165 ortholog_one2many 2 retrogenes
retro_ptro_1458, retro_ptro_2441,
Sus scrofa ENSSSCG00000004549 ortholog_one2many 1 retrogene
retro_sscr_851,
Ictidomys tridecemlineatus ENSSTOG00000010055 ortholog_one2many 2 retrogenes
retro_itri_1512, retro_itri_556,
Tarsius syrichta ENSTSYG00000008996 ortholog_one2many 3 retrogenes
retro_tsyr_1433, retro_tsyr_171, retro_tsyr_445,
Tursiops truncatus ENSTTRG00000011840 ortholog_one2many 3 retrogenes
retro_ttru_1046, retro_ttru_1212, retro_ttru_1790,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_298 97.96 54.14
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2. retro_cjac_1775 78.46 71.27
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Download FASTA sequences of all ENSCJAG00000005200 retrocopies