Parental gene:

RNF4, ENSSSCG00000008690

Aliases:None
Description:ring finger protein 4 [Source:HGNC Symbol;Acc:10067]
Organism:Pig (Sus scrofa)
Coordinates:8:918501..944201(+)


>ENSSSCG00000008690
ATGAGCACGAGAAAGCGTCGTGGCGGGGCAGTAAATTCTAGACAAGCCCAGAAGCGAACTCGAGAATCACCCTCCACCCC
TGAGATGGCCTTGGAGGCAGAACCTATAGAACTTGTGGAGAGTGCTGGAGACGAAATAGTGGACCTCACCTGTGAATCTT
TAGAGCCCGTGGTGGTGGACCTGACGCACAATGACTCTGTTGTGATTGTTGAAGAAAGGAGGCGGCCAAGGAGGAATGCG
AGGAGGCTGCGCCAGGACCACGCCGACAGCTGTGTGGTGAGCAGTGATGACGAGGAGCTGTCCAGGGACAGAGACGTCTA
TGTGACCACCCAGACCCCCCGAAATGCCAGGGAAGAGGCAGCTACAGGACTCAGGCCCTCTGGCACCGTCAGTTGTCCGA
TCTGCATGGACGGGTACTCAGAGATTGTGCAGAACGGACGTCTCATCGTTTCCACAGAATGCGGCCATGTCTTCTGTAGC
CAGTGCCTCCGCGATTCCCTTAAGAACGCTAACACTTGCCCAACTTGCAGGAAAAAGATCAACCACAAACGATACCACCC
CATTTATATATGA

Library Parental gene expression (RPM)
SRP014902_placenta 48 .71 RPM
SRP014902_testis 58 .84 RPM
SRP018288_heart 23 .42 RPM
SRP018288_kidney 53 .09 RPM
SRP018288_liver 35 .02 RPM
SRP018288_lung 66 .19 RPM
SRP018856_adipose 76 .11 RPM
SRP035408_brain 37 .92 RPM
SRP035408_liver 30 .94 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014366 ortholog_one2one 1 retrogene
retro_amel_77,
Canis familiaris ENSCAFG00000014856 ortholog_one2one 1 retrogene
retro_cfam_25,
Dipodomys ordii ENSDORG00000006675 ortholog_one2one 2 retrogenes
retro_dord_347, retro_dord_411,
Equus caballus ENSECAG00000024877 ortholog_one2one 1 retrogene
retro_ecab_33,
Echinops telfairi ENSETEG00000001683 ortholog_one2one 3 retrogenes
retro_etel_469, retro_etel_626, retro_etel_627,
Felis catus ENSFCAG00000004051 ortholog_one2one 1 retrogene
retro_fcat_897,
Loxodonta africana ENSLAFG00000007382 ortholog_one2one 1 retrogene
retro_lafr_44,
Myotis lucifugus ENSMLUG00000005969 ortholog_one2one 1 retrogene
retro_mluc_1640,
Nomascus leucogenys ENSNLEG00000000160 possible_ortholog 2 retrogenes
retro_nleu_1713, retro_nleu_37,
Oryctolagus cuniculus ENSOCUG00000004998 possible_ortholog 2 retrogenes
retro_ocun_1566, retro_ocun_162,
Ochotona princeps ENSOPRG00000004317 ortholog_one2one 3 retrogenes
retro_opri_112, retro_opri_783, retro_opri_863,
Procavia capensis ENSPCAG00000004528 ortholog_one2one 1 retrogene
retro_pcap_208,
Pongo abelii ENSPPYG00000025865 possible_ortholog 2 retrogenes
retro_pabe_1240, retro_pabe_36,
Ictidomys tridecemlineatus ENSSTOG00000011101 possible_ortholog 2 retrogenes
retro_itri_1108, retro_itri_171,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_181 52.45 74.21
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Download FASTA sequences of all ENSSSCG00000008690 retrocopies