RetrogeneDB ID: | retro_mluc_1640 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429876:4184908..4185205(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNF4 | ||
Ensembl ID: | ENSMLUG00000005969 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 53.92 % |
Parental protein coverage: | 51.55 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GGAANSRQAQK--RAREAAPTPVMALETEPIELVESAGDEIVDLTCESMEPVVVDLTHNDSVVIVDERRR |
G....SRQA.....AR...PTP...LE.E.IEL.ES...E.VDLT..S.EP.V.DLTH.DSVV...ERRR | |
Retrocopy | GRVVHSRQAREFCTARGGGPTPEVVLESELIELGES--EEVVDLTSDSLEPAVIDLTHHDSVVMTEERRR |
Parental | PRRNTRRQRQDHADSCVVSSDDEELSRDRDVY |
PRRN..R..Q.....CV.SS......RDRDVY | |
Retrocopy | PRRN-KRPLQGQTGICVLSSEKKGSMRDRDVY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000014366 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000014856 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000006675 | 2 retrocopies | |
Equus caballus | ENSECAG00000024877 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000001683 | 3 retrocopies | |
Felis catus | ENSFCAG00000004051 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000007382 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000005969 | 1 retrocopy |
retro_mluc_1640 ,
|
Nomascus leucogenys | ENSNLEG00000000160 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000004998 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000004317 | 3 retrocopies | |
Procavia capensis | ENSPCAG00000004528 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025865 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000008690 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000011101 | 2 retrocopies |