Parental gene:

VDAC1, ENSSSCG00000014296

Aliases:None
Description:Sus scrofa voltage-dependent anion channel 1 (VDAC1), nuclear gene encoding mitochondrial protein, mRNA. [Source:RefSeq mRNA;Acc:NM_213960]
Organism:Pig (Sus scrofa)
Coordinates:2:141876772..141909071(-)


>ENSSSCG00000014296
ATGGCTGTGCCTCCTACGTATGCCGATCTTGGCAAGTCTGCCAGGGATGTCTTCACCAAGGGCTATGGATTTGGCCTAAT
AAAACTTGATTTGAAAACAAAATCTGAGAATGGACTGGAATTTACAAGCTCAGGTTCAGCCAACACGGAGACCACCAAAG
TGACGGGCAGTCTGGAAACCAAGTACAGATGGACCGAATATGGTCTGACGTTTACAGAGAAGTGGAACACCGACAACACC
CTGGGCACGGAGATTACCGTGGAAGATCAGCTTGCCCGTGGACTGAAGCTGACCTTTGATTCATCCTTCTCACCGAACAC
TGGGAAAAAAAATGCCAAAATCAAGACCGGGTATAAGCGGGAGCACGTCAACCTGGGCTGCGACGTGGATTTCGACATCG
CTGGGCCGTCCATCCGCGGTGCTCTCGTGCTGGGTTATGAGGGCTGGCTGGCGGGCTACCAGATGAATTTTGAGACCGCC
AAGTCCCGAGTGACCCAGAGCAACTTTGCAGTCGGCTACAAGACCGATGAATTCCAGCTTCACACTAATGTAAATGATGG
GACGGAGTTTGGTGGCTCCATTTATCAGAAGGTGAACAAGAAGTTGGAGACCGCTGTTAATCTTGCCTGGACAGCAGGAA
ACAGCAACACACGCTTTGGAATAGCAGCCAAGTACCAGATCGACCCTGACGCCTGCTTCTCGGCTAAAGTGAACAACTCC
AGCCTGATAGGCTTAGGATACACTCAGACCCTAAAGCCAGGTATCAAACTGACGCTGTCCGCTCTGCTGGATGGCAAGAA
TGTCAACGCCGGTGGCCACAAGCTTGGTCTAGGACTGGAGTTTCAAGCATAA

Library Parental gene expression (RPM)
SRP014902_placenta 183 .43 RPM
SRP014902_testis 112 .31 RPM
SRP018288_heart 355 .84 RPM
SRP018288_kidney 311 .87 RPM
SRP018288_liver 161 .67 RPM
SRP018288_lung 91 .95 RPM
SRP018856_adipose 359 .94 RPM
SRP035408_brain 194 .69 RPM
SRP035408_liver 113 .40 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000000985 ortholog_one2one 1 retrogene
retro_cfam_1728,
Choloepus hoffmanni ENSCHOG00000005631 ortholog_one2one 6 retrogenes
retro_chof_1774, retro_chof_2420, retro_chof_813, retro_chof_858, retro_chof_866, retro_chof_99,
Callithrix jacchus ENSCJAG00000013556 ortholog_one2many 8 retrogenes
retro_cjac_1216, retro_cjac_1669, retro_cjac_1728, retro_cjac_2677, retro_cjac_3183, retro_cjac_3864, retro_cjac_454, retro_cjac_907,
Cavia porcellus ENSCPOG00000023840 possible_ortholog 2 retrogenes
retro_cpor_1061, retro_cpor_699,
Dasypus novemcinctus ENSDNOG00000002680 ortholog_one2one 5 retrogenes
retro_dnov_1367, retro_dnov_2117, retro_dnov_271, retro_dnov_30, retro_dnov_90,
Dipodomys ordii ENSDORG00000000714 ortholog_one2one 1 retrogene
retro_dord_636,
Equus caballus ENSECAG00000012365 ortholog_one2one 2 retrogenes
retro_ecab_831, retro_ecab_832,
Felis catus ENSFCAG00000008421 ortholog_one2many 1 retrogene
retro_fcat_1592,
Homo sapiens ENSG00000213585 ortholog_one2one 13 retrogenes
retro_hsap_1119, retro_hsap_1250, retro_hsap_2250, retro_hsap_2805, retro_hsap_308, retro_hsap_3527, retro_hsap_4287, retro_hsap_458, retro_hsap_4721, retro_hsap_4831, retro_hsap_4872, retro_hsap_4930, retro_hsap_847,
Gorilla gorilla ENSGGOG00000010880 ortholog_one2many 3 retrogenes
retro_ggor_693, retro_ggor_875, retro_ggor_981,
Loxodonta africana ENSLAFG00000028818 ortholog_one2one 1 retrogene
retro_lafr_161,
Macaca mulatta ENSMMUG00000016235 ortholog_one2many 6 retrogenes
retro_mmul_1023, retro_mmul_1070, retro_mmul_1305, retro_mmul_1851, retro_mmul_2417, retro_mmul_2613,
Monodelphis domestica ENSMODG00000014157 ortholog_one2one 1 retrogene
retro_mdom_1120,
Mustela putorius furo ENSMPUG00000010220 ortholog_one2many 1 retrogene
retro_mputfur_83,
Mus musculus ENSMUSG00000020402 ortholog_one2one 3 retrogenes
retro_mmus_2013, retro_mmus_3079, retro_mmus_3124,
Nomascus leucogenys ENSNLEG00000008023 ortholog_one2one 11 retrogenes
retro_nleu_1044, retro_nleu_1318, retro_nleu_1561, retro_nleu_189, retro_nleu_1991, retro_nleu_2707, retro_nleu_3019, retro_nleu_433, retro_nleu_492, retro_nleu_873, retro_nleu_880,
Otolemur garnettii ENSOGAG00000030742 ortholog_one2one 2 retrogenes
retro_ogar_1197, retro_ogar_2876,
Ochotona princeps ENSOPRG00000006605 ortholog_one2one 2 retrogenes
retro_opri_397, retro_opri_467,
Pongo abelii ENSPPYG00000015781 ortholog_one2one 6 retrogenes
retro_pabe_1042, retro_pabe_1733, retro_pabe_273, retro_pabe_2913, retro_pabe_3756, retro_pabe_700,
Pan troglodytes ENSPTRG00000017235 ortholog_one2one 12 retrogenes
retro_ptro_1593, retro_ptro_1900, retro_ptro_249, retro_ptro_2905, retro_ptro_3138, retro_ptro_3215, retro_ptro_3246, retro_ptro_345, retro_ptro_588, retro_ptro_682, retro_ptro_84, retro_ptro_861,
Rattus norvegicus ENSRNOG00000006375 ortholog_one2many 8 retrogenes
retro_rnor_1235, retro_rnor_1398, retro_rnor_1482, retro_rnor_1594, retro_rnor_1664, retro_rnor_776, retro_rnor_777, retro_rnor_947,
Sus scrofa ENSSSCG00000010320 within_species_paralog 2 retrogenes
retro_sscr_681, retro_sscr_791,
Ictidomys tridecemlineatus ENSSTOG00000007764 ortholog_one2one 3 retrogenes
retro_itri_1137, retro_itri_1506, retro_itri_693,
Tursiops truncatus ENSTTRG00000016856 ortholog_one2one 2 retrogenes
retro_ttru_1347, retro_ttru_752,
Vicugna pacos ENSVPAG00000010448 ortholog_one2one 1 retrogene
retro_vpac_38,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_346 64.61 62.54
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2. retro_sscr_801 85.71 56.18
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Download FASTA sequences of all ENSSSCG00000014296 retrocopies