Parental gene:

ENSCJAG00000013556

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:2:71303612..71336644(+)


>ENSCJAG00000013556
ATGGCTGTGCCACCCACGTATGCCGATCTTGGCAAATCTGCCAGGGATGTCTTCACCAAGGGCTATGGATTTGGCTTAAT
AAAGCTTGATTTGAAAACAAAATCTGAGAATGGATTGGAATTTACAAGCTCAGGCTCAGCCAACACTGAGACCACCAAAG
TGACGGGCAGTCTGGAAACCAAGTACAGATGGACTGAGTACGGCCTGACGTTTACGGAGAAATGGAACACCGACAATACA
CTAGGCACTGAGATTACCTTGGAAGATCAGCTTGCACGTGGACTGAAGCTGACTTTCGATTCATCCTTCTCACCTAACAC
TGGGAAAAAAAATGCTAAAATCAAGACAGGGTACAAGCGTGAGCACATTAACCTGGGCTGCGACATGGATTTCGACATTG
CTGGGCCTTCCATCCGGGGTGCTCTGGTGCTGGGTTATGAGGGCTGGCTGGCTGGCTACCAGATGAATTTTGAGACTGCA
AAGTCCCGAGTGACCCAGAGCAACTTTGCAGTTGGCTACAAGACTGATGAATTCCAGCTTCATACTAATGTGAATGACGG
GACAGAGTTTGGCGGCTCCATTTACCAGAAGGTGAACAAGAAGTTGGAGACCGCTGTCAATCTTGCCTGGACAGCCGGAA
ACAGTAACACGCGCTTCGGAATAGCAGCCAAGTATCAGATTGACCCTGACGCCTGCTTCTCGGCTAAAGTGAATAACTCC
AGCCTGATAGGTTTAGGATATACTCAGACTCTAAAGCCAGGTATCAAACTGACACTGTCAGCTCTTCTGGATGGCAAGAA
CGTCAATGCTGGTGGCCACAAGCTTGGTCTAGGACTGGAATTTCAAGCATAA

Library Parental gene expression (RPM)
SRP051959_spleen 15 .23 RPM
SRP051959_skeletal_muscle 150 .35 RPM
SRP051959_lymph_node 10 .23 RPM
SRP051959_lung 14 .74 RPM
SRP051959_liver 42 .78 RPM
SRP051959_kidney 59 .70 RPM
SRP051959_heart 74 .51 RPM
SRP051959_colon 45 .55 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000000985 ortholog_one2many 1 retrogene
retro_cfam_1728,
Choloepus hoffmanni ENSCHOG00000005631 ortholog_one2many 6 retrogenes
retro_chof_1774, retro_chof_2420, retro_chof_813, retro_chof_858, retro_chof_866, retro_chof_99,
Callithrix jacchus ENSCJAG00000001145 within_species_paralog 1 retrogene
retro_cjac_2385,
Cavia porcellus ENSCPOG00000023840 possible_ortholog 2 retrogenes
retro_cpor_1061, retro_cpor_699,
Dasypus novemcinctus ENSDNOG00000002680 ortholog_one2many 5 retrogenes
retro_dnov_1367, retro_dnov_2117, retro_dnov_271, retro_dnov_30, retro_dnov_90,
Dipodomys ordii ENSDORG00000000714 ortholog_one2many 1 retrogene
retro_dord_636,
Equus caballus ENSECAG00000012365 ortholog_one2many 2 retrogenes
retro_ecab_831, retro_ecab_832,
Felis catus ENSFCAG00000008421 ortholog_many2many 1 retrogene
retro_fcat_1592,
Homo sapiens ENSG00000213585 ortholog_one2many 13 retrogenes
retro_hsap_1119, retro_hsap_1250, retro_hsap_2250, retro_hsap_2805, retro_hsap_308, retro_hsap_3527, retro_hsap_4287, retro_hsap_458, retro_hsap_4721, retro_hsap_4831, retro_hsap_4872, retro_hsap_4930, retro_hsap_847,
Gorilla gorilla ENSGGOG00000010880 ortholog_one2many 3 retrogenes
retro_ggor_693, retro_ggor_875, retro_ggor_981,
Loxodonta africana ENSLAFG00000028818 ortholog_one2many 1 retrogene
retro_lafr_161,
Macaca mulatta ENSMMUG00000016235 ortholog_one2many 6 retrogenes
retro_mmul_1023, retro_mmul_1070, retro_mmul_1305, retro_mmul_1851, retro_mmul_2417, retro_mmul_2613,
Monodelphis domestica ENSMODG00000014157 ortholog_one2many 1 retrogene
retro_mdom_1120,
Mustela putorius furo ENSMPUG00000010220 ortholog_many2many 1 retrogene
retro_mputfur_83,
Mus musculus ENSMUSG00000020402 ortholog_one2many 3 retrogenes
retro_mmus_2013, retro_mmus_3079, retro_mmus_3124,
Nomascus leucogenys ENSNLEG00000008023 ortholog_one2many 11 retrogenes
retro_nleu_1044, retro_nleu_1318, retro_nleu_1561, retro_nleu_189, retro_nleu_1991, retro_nleu_2707, retro_nleu_3019, retro_nleu_433, retro_nleu_492, retro_nleu_873, retro_nleu_880,
Oryctolagus cuniculus ENSOCUG00000009369 possible_ortholog 3 retrogenes
retro_ocun_1253, retro_ocun_1428, retro_ocun_583,
Otolemur garnettii ENSOGAG00000030742 ortholog_one2many 2 retrogenes
retro_ogar_1197, retro_ogar_2876,
Ochotona princeps ENSOPRG00000006605 ortholog_one2many 2 retrogenes
retro_opri_397, retro_opri_467,
Pongo abelii ENSPPYG00000015781 ortholog_one2many 6 retrogenes
retro_pabe_1042, retro_pabe_1733, retro_pabe_273, retro_pabe_2913, retro_pabe_3756, retro_pabe_700,
Pan troglodytes ENSPTRG00000017235 ortholog_one2many 12 retrogenes
retro_ptro_1593, retro_ptro_1900, retro_ptro_249, retro_ptro_2905, retro_ptro_3138, retro_ptro_3215, retro_ptro_3246, retro_ptro_345, retro_ptro_588, retro_ptro_682, retro_ptro_84, retro_ptro_861,
Rattus norvegicus ENSRNOG00000006375 ortholog_many2many 8 retrogenes
retro_rnor_1235, retro_rnor_1398, retro_rnor_1482, retro_rnor_1594, retro_rnor_1664, retro_rnor_776, retro_rnor_777, retro_rnor_947,
Sorex araneus ENSSARG00000008221 possible_ortholog 6 retrogenes
retro_sara_115, retro_sara_327, retro_sara_355, retro_sara_533, retro_sara_668, retro_sara_702,
Sus scrofa ENSSSCG00000014296 ortholog_one2many 2 retrogenes
retro_sscr_346, retro_sscr_801,
Ictidomys tridecemlineatus ENSSTOG00000007764 ortholog_one2many 3 retrogenes
retro_itri_1137, retro_itri_1506, retro_itri_693,
Tupaia belangeri ENSTBEG00000003852 possible_ortholog 4 retrogenes
retro_tbel_1282, retro_tbel_2613, retro_tbel_3818, retro_tbel_4546,
Tarsius syrichta ENSTSYG00000007346 possible_ortholog 1 retrogene
retro_tsyr_161,
Tursiops truncatus ENSTTRG00000016856 ortholog_one2many 2 retrogenes
retro_ttru_1347, retro_ttru_752,
Vicugna pacos ENSVPAG00000010448 ortholog_one2many 1 retrogene
retro_vpac_38,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_454 86.14 71.02
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2. retro_cjac_907 92.57 51.94
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3. retro_cjac_1216 76.56 95.05
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4. retro_cjac_1669 60.85 65.72
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5. retro_cjac_1728 68.25 66.08
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6. retro_cjac_2677 70.27 64.31
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7. retro_cjac_3183 91.90 100.00
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8. retro_cjac_3864 80.70 100.00
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Download FASTA sequences of all ENSCJAG00000013556 retrocopies