Parental gene:

RPL6, ENSSSCG00000024825

Aliases:None
Description:Sus scrofa ribosomal protein L6 (RPL6), mRNA. [Source:RefSeq mRNA;Acc:NM_001044542]
Organism:Pig (Sus scrofa)
Coordinates:14:41805404..41812197(+)


>ENSSSCG00000024825
ATGGCGGGTGAAAAAGCTGAGAAGCCAGGAACTAAGGAGAAAAAGCCTGAAGCCAAGAAGGCTGATGCTGGTGGTAAAGT
TAAAAAGGCTAAGAAGGTTAAGAAGGGGAAGCCCCACTGCAGCCGAAACCCTGTCCTGGTCAGAGGAATTGGCAGATATT
CCCGATCGGCTATGTATTCCAGAAAGGCTTTGTACAAGAGGAAGTATTCAGCAGCTAAATCCAAGGTTGAAAAGAAAAAG
AAGGTGAGAGTTCTTGCTACTGTCACAAAACCCGTTGGTGGTGACAAGAATGGTGGTACCCGAGTTGTTAAACTTCGAAA
AATGCCTAGATATTATCCTACTGAAGATGTGCCCCGAAAACTGTTGAGTCATGGCAAAAAACCCTTCAGTAAGCACGTGA
GAAAACTGCGGGCCAGCATCACTCCTGGGACCATTCTGATCATCCTCACCGGGCGCCACAGAGGCAAGAGGGTCATTTTC
CTGAAGCAGCTGAGCAGTGGCTTGTTACTTGTGACTGGACCTCTGTCTCTCAATCGAGTTCCTCTGCGTAGAACACACCA
GAAATTTGTTATTGCCACCTCCACCAAAATTGATATCAGTGGAGTAAAAATTCCGGAACACCTCACTGATGCTTACTTCA
AGAAGAAGAAGCTGCGTAAGCCTAGGCACCAGGAAGGAGAGATCTTCGACACAGAGAAAGAGAAATACGAAATTTCAGAG
CAGCGCAAGGTTGATCAGAAAGCTGTGGACTCACAAATTCTGCGAAGAATCAAAGCTGTTCCTCAGCTCCAGGGCTACCT
CCGCTCTGTGTTTGCCCTCACAAATGGGATTTATCCTCACAAGTTGGTGTTCTAA

Library Parental gene expression (RPM)
SRP014902_placenta 482 .61 RPM
SRP014902_testis 1227 .90 RPM
SRP018288_heart 833 .48 RPM
SRP018288_kidney 612 .90 RPM
SRP018288_liver 486 .29 RPM
SRP018288_lung 983 .64 RPM
SRP018856_adipose 2000 .01 RPM
SRP035408_brain 913 .88 RPM
SRP035408_liver 532 .04 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000003060 ortholog_one2many 1 retrogene
retro_acar_171,
Bos taurus ENSBTAG00000031723 ortholog_one2many 6 retrogenes
retro_btau_1038, retro_btau_1117, retro_btau_1305, retro_btau_16, retro_btau_424, retro_btau_809,
Canis familiaris ENSCAFG00000008873 possible_ortholog 1 retrogene
retro_cfam_36,
Callithrix jacchus ENSCJAG00000012450 possible_ortholog 7 retrogenes
retro_cjac_1362, retro_cjac_1620, retro_cjac_1949, retro_cjac_2723, retro_cjac_328, retro_cjac_349, retro_cjac_497,
Cavia porcellus ENSCPOG00000013526 possible_ortholog 8 retrogenes
retro_cpor_1105, retro_cpor_1149, retro_cpor_1486, retro_cpor_382, retro_cpor_412, retro_cpor_651, retro_cpor_731, retro_cpor_982,
Equus caballus ENSECAG00000017514 possible_ortholog 1 retrogene
retro_ecab_811,
Felis catus ENSFCAG00000006858 possible_ortholog 12 retrogenes
retro_fcat_1264, retro_fcat_1370, retro_fcat_1844, retro_fcat_232, retro_fcat_398, retro_fcat_500, retro_fcat_625, retro_fcat_637, retro_fcat_643, retro_fcat_690, retro_fcat_926, retro_fcat_935,
Gorilla gorilla ENSGGOG00000003372 possible_ortholog 16 retrogenes
retro_ggor_1602, retro_ggor_1893, retro_ggor_1898, retro_ggor_2047, retro_ggor_2138, retro_ggor_236, retro_ggor_2569, retro_ggor_2597, retro_ggor_2709, retro_ggor_2745, retro_ggor_290, retro_ggor_2938, retro_ggor_356, retro_ggor_426, retro_ggor_566, retro_ggor_816,
Macaca mulatta ENSMMUG00000007433 possible_ortholog 1 retrogene
retro_mmul_171,
Monodelphis domestica ENSMODG00000003096 ortholog_one2one 4 retrogenes
retro_mdom_1556, retro_mdom_1624, retro_mdom_1784, retro_mdom_615,
Mustela putorius furo ENSMPUG00000002526 possible_ortholog 9 retrogenes
retro_mputfur_1116, retro_mputfur_1279, retro_mputfur_1320, retro_mputfur_1367, retro_mputfur_1407, retro_mputfur_1445, retro_mputfur_1489, retro_mputfur_401, retro_mputfur_571,
Mus musculus ENSMUSG00000029614 possible_ortholog 13 retrogenes
retro_mmus_1264, retro_mmus_1336, retro_mmus_1898, retro_mmus_2684, retro_mmus_276, retro_mmus_3065, retro_mmus_3579, retro_mmus_3611, retro_mmus_3622, retro_mmus_3719, retro_mmus_445, retro_mmus_465, retro_mmus_730,
Nomascus leucogenys ENSNLEG00000027093 possible_ortholog 2 retrogenes
retro_nleu_1813, retro_nleu_43,
Oryctolagus cuniculus ENSOCUG00000003802 possible_ortholog 5 retrogenes
retro_ocun_129, retro_ocun_17, retro_ocun_189, retro_ocun_229, retro_ocun_245,
Pongo abelii ENSPPYG00000025855 possible_ortholog 13 retrogenes
retro_pabe_1764, retro_pabe_1891, retro_pabe_2451, retro_pabe_2493, retro_pabe_2573, retro_pabe_2897, retro_pabe_3314, retro_pabe_358, retro_pabe_3677, retro_pabe_3725, retro_pabe_43, retro_pabe_472, retro_pabe_868,
Rattus norvegicus ENSRNOG00000025936 possible_ortholog 1 retrogene
retro_rnor_129,
Sarcophilus harrisii ENSSHAG00000007096 ortholog_one2many 2 retrogenes
retro_shar_506, retro_shar_536,
Ictidomys tridecemlineatus ENSSTOG00000009409 possible_ortholog 3 retrogenes
retro_itri_1024, retro_itri_1125, retro_itri_684,
Tursiops truncatus ENSTTRG00000009268 ortholog_one2one 7 retrogenes
retro_ttru_1053, retro_ttru_1428, retro_ttru_1827, retro_ttru_424, retro_ttru_608, retro_ttru_652, retro_ttru_954,
Vicugna pacos ENSVPAG00000007000 ortholog_one2one 5 retrogenes
retro_vpac_100, retro_vpac_184, retro_vpac_374, retro_vpac_623, retro_vpac_75,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_397 83.24 64.79
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2. retro_sscr_578 73.65 58.10
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3. retro_sscr_1086 69.32 86.97
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4. retro_sscr_1137 55.92 72.18
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Download FASTA sequences of all ENSSSCG00000024825 retrocopies