RetrogeneDB ID: | retro_sscr_397 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 13:203723687..203724238(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSSCG00000012032 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL6 | ||
Ensembl ID: | ENSSSCG00000024825 | ||
Aliases: | None | ||
Description: | Sus scrofa ribosomal protein L6 (RPL6), mRNA. [Source:RefSeq mRNA;Acc:NM_001044542] |
Percent Identity: | 83.24 % |
Parental protein coverage: | 64.79 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | EKAEKPGTKEKKPEAKKADAGGKVKKAKKVKKGKPHCSR-NPVLVRGIGRYSRSAMYSRKALYKRKYSAA |
EKAEKPGTK.K.PEA.KADAGGKVKKAK.VKKGKPHCSR.NPVLVRGIGRYS..A.YSRKALYKRKYSAA | |
Retrocopy | EKAEKPGTKKKNPEATKADAGGKVKKAKQVKKGKPHCSR<NPVLVRGIGRYSHVAVYSRKALYKRKYSAA |
Parental | KSKVEKKKKVRVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASITP |
KSKVEKKKKVRVLATVTK..GGDKN.GTRVVKL.KMPRYYPTEDVP.KLLSH.KKPF.KHVRKL.ASI.P | |
Retrocopy | KSKVEKKKKVRVLATVTKSIGGDKNAGTRVVKLQKMPRYYPTEDVP*KLLSHSKKPFRKHVRKLWASIIP |
Parental | GTILIILTGRHRGKRVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQ |
GTILIIL.G..RGKRVIFLKQLSSGLLLVTGP...........HQ | |
Retrocopy | GTILIILIGHQRGKRVIFLKQLSSGLLLVTGP*NTPEICYCHLHQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 482 .61 RPM |
SRP014902_testis | 0 .42 RPM | 1227 .90 RPM |
SRP018288_heart | 0 .00 RPM | 833 .48 RPM |
SRP018288_kidney | 0 .00 RPM | 612 .90 RPM |
SRP018288_liver | 0 .00 RPM | 486 .29 RPM |
SRP018288_lung | 0 .00 RPM | 983 .64 RPM |
SRP018856_adipose | 0 .05 RPM | 2000 .01 RPM |
SRP035408_brain | 0 .00 RPM | 913 .88 RPM |
SRP035408_liver | 0 .00 RPM | 532 .04 RPM |