Parental gene:

RPL13, ENSSSCG00000024974

Aliases:None
Description:ribosomal protein L13 [Source:HGNC Symbol;Acc:10303]
Organism:Pig (Sus scrofa)
Coordinates:6:517792..520205(-)


>ENSSSCG00000024974
ATGGCGCCCAGCAGGAATGGCATGATCCTGAAGCCCCACTTCCACAAGGACTGGCAGCGGCGCGTGGCCACGTGGTTCAA
CCAGCCGGCGCGCAAGATCCGCAGGCGCAAGGCTCGGCAGGCCAAGGCGCGCCGCATCGCCCCGCGCCCCGCGTCCGGCC
CGCTGCGGCCGGTGGTGAGATGCCCCACGGTCCGGTACCACACGAAGGTGCGCGCCGGCAGAGGCTTCAGCCTGGAGGAG
CTGAGGGTGGCCGGCATCCACAAGAAGGTGGCCCGGACCATTGGGATCTCGGTGGATCCCCGGCGGCGGAACAAGTGCAC
GGAGTCCCTGCAGGCTAATGTGCAGCGGCTCAAGGAGTACCGCTCCAAGCTCATCCTCTTCCCCAGGAAGCCCTCGGCCC
CCAAGAAGGGCGACAGCTCTGCTGAAGAGCTCAAGTTGGCCACCCAGCTGACAGGACCGGTCATGCCCATACGGAACGTG
TACAAGAGGGAAAAGGCCAGAGTCATCACGGACGAGGAGAAGAACTTCAAGGCCTTTGCCAGTCTCCGCATGGCCCGTGC
CAACGCCCGGCTCTTTGGTATACGGGCAAAAAGGGCCAAGGAAGCTGCAGAACAGGATGTGGAGAAGAAAAAATAA

Library Parental gene expression (RPM)
SRP014902_placenta 693 .52 RPM
SRP014902_testis 1234 .40 RPM
SRP018288_heart 177 .93 RPM
SRP018288_kidney 289 .41 RPM
SRP018288_liver 292 .95 RPM
SRP018288_lung 247 .64 RPM
SRP018856_adipose 666 .46 RPM
SRP035408_brain 289 .34 RPM
SRP035408_liver 240 .66 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000017072 ortholog_one2one 1 retrogene
retro_acar_70,
Ailuropoda melanoleuca ENSAMEG00000001111 ortholog_one2one 5 retrogenes
retro_amel_1268, retro_amel_1319, retro_amel_188, retro_amel_411, retro_amel_802,
Bos taurus ENSBTAG00000012044 ortholog_one2one 2 retrogenes
retro_btau_716, retro_btau_817,
Canis familiaris ENSCAFG00000019840 possible_ortholog 5 retrogenes
retro_cfam_1135, retro_cfam_1919, retro_cfam_2122, retro_cfam_565, retro_cfam_897,
Callithrix jacchus ENSCJAG00000009672 possible_ortholog 5 retrogenes
retro_cjac_2607, retro_cjac_2961, retro_cjac_4054, retro_cjac_663, retro_cjac_747,
Echinops telfairi ENSETEG00000015057 possible_ortholog 4 retrogenes
retro_etel_1240, retro_etel_1382, retro_etel_1606, retro_etel_703,
Gorilla gorilla ENSGGOG00000025427 possible_ortholog 6 retrogenes
retro_ggor_1548, retro_ggor_1963, retro_ggor_2231, retro_ggor_2732, retro_ggor_562, retro_ggor_767,
Monodelphis domestica ENSMODG00000003663 ortholog_one2one 4 retrogenes
retro_mdom_1001, retro_mdom_416, retro_mdom_439, retro_mdom_674,
Mus musculus ENSMUSG00000000740 possible_ortholog 23 retrogenes
retro_mmus_1091, retro_mmus_1522, retro_mmus_1533, retro_mmus_1854, retro_mmus_2074, retro_mmus_2163, retro_mmus_2186, retro_mmus_2321, retro_mmus_2333, retro_mmus_2351, retro_mmus_25, retro_mmus_2668, retro_mmus_2718, retro_mmus_3097, retro_mmus_3274, retro_mmus_3453, retro_mmus_3489, retro_mmus_3500, retro_mmus_355, retro_mmus_3711, retro_mmus_692, retro_mmus_732, retro_mmus_863,
Ornithorhynchus anatinus ENSOANG00000006729 ortholog_one2one 1 retrogene
retro_oana_78,
Rattus norvegicus ENSRNOG00000015335 possible_ortholog 14 retrogenes
retro_rnor_1054, retro_rnor_1260, retro_rnor_158, retro_rnor_160, retro_rnor_1719, retro_rnor_1720, retro_rnor_1834, retro_rnor_1848, retro_rnor_2471, retro_rnor_2574, retro_rnor_2608, retro_rnor_2787, retro_rnor_2854, retro_rnor_682,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_725 76.16 71.09
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2. retro_sscr_884 75.46 99.53
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3. retro_sscr_1044 78.52 63.03
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Download FASTA sequences of all ENSSSCG00000024974 retrocopies