RetrogeneDB ID: | retro_ggor_2732 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 8:68872479..68872946(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL13 | ||
Ensembl ID: | ENSGGOG00000025427 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L13 [Source:UniProtKB/TrEMBL;Acc:G3RUF5] |
Percent Identity: | 73.89 % |
Parental protein coverage: | 88.14 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | SGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQR-LKEY |
SGPI.PIVRC..VRYHTKV.AG.GFS.EELRV.GIHKKVA....ISVDPRR.NKST.SLQANVQ..L.E. | |
Retrocopy | SGPIWPIVRCCMVRYHTKVHAGQGFSMEELRVVGIHKKVAQNTDISVDPRRQNKSTKSLQANVQC<LMEC |
Parental | RSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRMARANAR |
RSKLILFPRKP.APKK.DSSAEELKL...LTG..MP..NVYKKE.AR.ITEE.KN.KAFASL..A..NA. | |
Retrocopy | RSKLILFPRKPLAPKKEDSSAEELKLPQ*LTGLLMPVQNVYKKEEARGITEEGKNSKAFASLHVACTNAQ |
Parental | LFGIRAKRAKEAAEQDV |
LF.I..KR.KEA.EQD. | |
Retrocopy | LFCIWVKRTKEAEEQDI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 118 .40 RPM |
SRP007412_cerebellum | 0 .00 RPM | 160 .19 RPM |
SRP007412_heart | 0 .00 RPM | 135 .27 RPM |
SRP007412_kidney | 0 .04 RPM | 269 .25 RPM |
SRP007412_liver | 0 .00 RPM | 385 .09 RPM |
SRP007412_testis | 0 .10 RPM | 108 .05 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4074 |
Pan troglodytes | retro_ptro_2761 |
Macaca mulatta | retro_mmul_2350 |