Parental gene:

RPL13, ENSGGOG00000025427

Aliases:None
Description:60S ribosomal protein L13 [Source:UniProtKB/TrEMBL;Acc:G3RUF5]
Organism:Gorilla (Gorilla gorilla)
Coordinates:16:80282960..80286275(+)


>ENSGGOG00000025427
AGACGTAAGGCCCGGCAAGCCAAGGCGCGCCGCATCGCCCCGCGCCCCGCGTCGGGGCCCATCCGGCCCATCGTGCGCTG
CCCCACGGTTCGGTACCACACGAAGGTGCGCGCCGGCCGCGGCTTCAGCCTGGAGGAGCTCAGGGTGGCCGGCATTCACA
AGAAGGTGGCCCGGACCATCGGCATTTCTGTGGATCCGAGGAGGCGGAACAAGTCCACGGAGTCCCTGCAGGCCAACGTG
CAGCGGCTGAAGGAGTACCGCTCCAAACTCATCCTCTTCCCCAGGAAGCCCTCGGCCCCCAAGAAGGGAGACAGTTCTGC
TGAAGAACTGAAACTGGCCACCCAGCTGACCGGACCGGTCATGCCCATCCGGAACGTCTATAAGAAGGAGAAAGCTCGAG
TCATCACTGAGGAAGAGAAGAATTTCAAAGCCTTCGCTAGTCTCCGTATGGCCCGTGCCAACGCCCGGCTCTTCGGCATA
CGGGCAAAAAGAGCCAAGGAAGCCGCAGAACAGGATGTTGAAAAGAAAAAATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 118 .40 RPM
SRP007412_cerebellum 160 .19 RPM
SRP007412_heart 135 .27 RPM
SRP007412_kidney 269 .25 RPM
SRP007412_liver 385 .09 RPM
SRP007412_testis 108 .05 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000017072 ortholog_one2many 1 retrogene
retro_acar_70,
Ailuropoda melanoleuca ENSAMEG00000001111 possible_ortholog 5 retrogenes
retro_amel_1268, retro_amel_1319, retro_amel_188, retro_amel_411, retro_amel_802,
Bos taurus ENSBTAG00000012044 possible_ortholog 2 retrogenes
retro_btau_716, retro_btau_817,
Canis familiaris ENSCAFG00000019840 ortholog_one2one 5 retrogenes
retro_cfam_1135, retro_cfam_1919, retro_cfam_2122, retro_cfam_565, retro_cfam_897,
Callithrix jacchus ENSCJAG00000009672 ortholog_one2one 5 retrogenes
retro_cjac_2607, retro_cjac_2961, retro_cjac_4054, retro_cjac_663, retro_cjac_747,
Cavia porcellus ENSCPOG00000027348 ortholog_one2one 4 retrogenes
retro_cpor_1014, retro_cpor_1192, retro_cpor_1242, retro_cpor_491,
Echinops telfairi ENSETEG00000015057 possible_ortholog 4 retrogenes
retro_etel_1240, retro_etel_1382, retro_etel_1606, retro_etel_703,
Felis catus ENSFCAG00000003338 ortholog_one2one 4 retrogenes
retro_fcat_1946, retro_fcat_706, retro_fcat_852, retro_fcat_866,
Loxodonta africana ENSLAFG00000004054 possible_ortholog 5 retrogenes
retro_lafr_659, retro_lafr_766, retro_lafr_827, retro_lafr_828, retro_lafr_829,
Microcebus murinus ENSMICG00000008191 ortholog_one2one 4 retrogenes
retro_mmur_249, retro_mmur_288, retro_mmur_779, retro_mmur_908,
Myotis lucifugus ENSMLUG00000010950 ortholog_one2one 6 retrogenes
retro_mluc_1431, retro_mluc_1436, retro_mluc_1549, retro_mluc_2022, retro_mluc_891, retro_mluc_991,
Macaca mulatta ENSMMUG00000017928 possible_ortholog 7 retrogenes
retro_mmul_2021, retro_mmul_2150, retro_mmul_2350, retro_mmul_579, retro_mmul_593, retro_mmul_737, retro_mmul_781,
Monodelphis domestica ENSMODG00000003663 ortholog_one2many 4 retrogenes
retro_mdom_1001, retro_mdom_416, retro_mdom_439, retro_mdom_674,
Mus musculus ENSMUSG00000000740 possible_ortholog 23 retrogenes
retro_mmus_1091, retro_mmus_1522, retro_mmus_1533, retro_mmus_1854, retro_mmus_2074, retro_mmus_2163, retro_mmus_2186, retro_mmus_2321, retro_mmus_2333, retro_mmus_2351, retro_mmus_25, retro_mmus_2668, retro_mmus_2718, retro_mmus_3097, retro_mmus_3274, retro_mmus_3453, retro_mmus_3489, retro_mmus_3500, retro_mmus_355, retro_mmus_3711, retro_mmus_692, retro_mmus_732, retro_mmus_863,
Ornithorhynchus anatinus ENSOANG00000006729 ortholog_one2many 1 retrogene
retro_oana_78,
Otolemur garnettii ENSOGAG00000026444 ortholog_one2one 3 retrogenes
retro_ogar_1165, retro_ogar_1831, retro_ogar_1853,
Pteropus vampyrus ENSPVAG00000015130 ortholog_one2one 6 retrogenes
retro_pvam_1174, retro_pvam_1289, retro_pvam_1344, retro_pvam_228, retro_pvam_58, retro_pvam_616,
Rattus norvegicus ENSRNOG00000015335 possible_ortholog 14 retrogenes
retro_rnor_1054, retro_rnor_1260, retro_rnor_158, retro_rnor_160, retro_rnor_1719, retro_rnor_1720, retro_rnor_1834, retro_rnor_1848, retro_rnor_2471, retro_rnor_2574, retro_rnor_2608, retro_rnor_2787, retro_rnor_2854, retro_rnor_682,
Sus scrofa ENSSSCG00000024974 possible_ortholog 3 retrogenes
retro_sscr_1044, retro_sscr_725, retro_sscr_884,
Vicugna pacos ENSVPAG00000000569 possible_ortholog 4 retrogenes
retro_vpac_310, retro_vpac_312, retro_vpac_576, retro_vpac_631,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ggor_562 76.53 54.80
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2. retro_ggor_767 76.28 87.01
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3. retro_ggor_1548 72.73 86.44
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4. retro_ggor_1963 62.50 78.53
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5. retro_ggor_2231 72.19 84.18
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6. retro_ggor_2732 73.89 88.14
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Download FASTA sequences of all ENSGGOG00000025427 retrocopies