Parental gene:

RPL6, ENSTSYG00000009492

Aliases:None
Description:ribosomal protein L6 [Source:HGNC Symbol;Acc:10362]
Organism:Tarsier (Tarsius syrichta)
Coordinates:scaffold_79610:254..4900(-)


>ENSTSYG00000009492
ATGGCGGGTGAAAAAGTTGAGAAGCCAAATGCTAAGGAAAAGAAACCTGAAACCAAGAAGGCTGATGCTGGTGGCAAGGT
GAAAAAGGGTAAGCTCAAGGCTAAAAAGCCGAAGAAGGGGAAACCCCACTGCAGCCGAAATCCTGTCCTTGTCAGAGGAA
TTGGAAGATATTCCCGATCTGCTATGTATTCCAGAAAGGCCTTGTACAAGAGGAAGTACTCAGCAGCTAAATCCAAGGTT
GAAAAGAAAAAAAAGGAGAAGGTTCTTGCAACTGTTACAAAACCGGTTGGTGGTGACAAGAATGGTGGTACCCGAGTGGT
TAAACTTCGCAAAATGCCTAGATATTATCCGACTGAAGATGTGCCTCGAAAACTGTTAAGCCATGGGAAAAAGCCCTTCA
GCCAGCACATTAGAAAACTGCGAGCCAGCATCACTCCCGGGACCATCCTGATCATCCTCACTGGGCGCCACAGAGGCAAG
AGGGTGGTTTTCCTGAAGCAACTGGGCAGTGGCTTGTTACTTGTGACTGGACCTCTGGTCCTCAATCGAGTTCCTCTGAG
AAGAACACACCAGAAATTTGTCATCGCCACCTCCACAAAAATTGATATCAGCAATGTGAAGGTCCCAAAACATCTTACTG
ATGCTTACTTCAAGAAGAAGCAGCTGCGGAAGCCCAGGCACCAGGAGGGTGAGATCTTTGACACAGAAAAAGAGAAATAT
GAGATTACAGAGCAGCGCAAGATTGATCAGAAAGCTGTGGACTCGCAAATCTTACCAAAAATCAAAGCTATTCCTCAGCT
CCAGGGCTACCTGCGATCTGTGTTTGCCCTGACAAATGGTGTTTATCCTCACAAATTAGTGTTCTAA

Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000003060 ortholog_one2many 1 retrogene
retro_acar_171,
Bos taurus ENSBTAG00000031723 possible_ortholog 6 retrogenes
retro_btau_1038, retro_btau_1117, retro_btau_1305, retro_btau_16, retro_btau_424, retro_btau_809,
Canis familiaris ENSCAFG00000008873 possible_ortholog 1 retrogene
retro_cfam_36,
Callithrix jacchus ENSCJAG00000012450 ortholog_one2many 7 retrogenes
retro_cjac_1362, retro_cjac_1620, retro_cjac_1949, retro_cjac_2723, retro_cjac_328, retro_cjac_349, retro_cjac_497,
Cavia porcellus ENSCPOG00000013526 ortholog_one2one 8 retrogenes
retro_cpor_1105, retro_cpor_1149, retro_cpor_1486, retro_cpor_382, retro_cpor_412, retro_cpor_651, retro_cpor_731, retro_cpor_982,
Dipodomys ordii ENSDORG00000005793 ortholog_one2one 1 retrogene
retro_dord_166,
Equus caballus ENSECAG00000017514 possible_ortholog 1 retrogene
retro_ecab_811,
Erinaceus europaeus ENSEEUG00000000281 ortholog_one2one 3 retrogenes
retro_eeur_503, retro_eeur_553, retro_eeur_595,
Felis catus ENSFCAG00000006858 possible_ortholog 12 retrogenes
retro_fcat_1264, retro_fcat_1370, retro_fcat_1844, retro_fcat_232, retro_fcat_398, retro_fcat_500, retro_fcat_625, retro_fcat_637, retro_fcat_643, retro_fcat_690, retro_fcat_926, retro_fcat_935,
Homo sapiens ENSG00000089009 ortholog_one2one 26 retrogenes
retro_hsap_1035, retro_hsap_146, retro_hsap_1905, retro_hsap_2074, retro_hsap_2164, retro_hsap_2206, retro_hsap_227, retro_hsap_2566, retro_hsap_2720, retro_hsap_2725, retro_hsap_2939, retro_hsap_2955, retro_hsap_3009, retro_hsap_3014, retro_hsap_3070, retro_hsap_333, retro_hsap_3431, retro_hsap_3559, retro_hsap_3795, retro_hsap_3818, retro_hsap_3856, retro_hsap_4039, retro_hsap_440, retro_hsap_4729, retro_hsap_4788, retro_hsap_648,
Gorilla gorilla ENSGGOG00000003372 ortholog_one2many 16 retrogenes
retro_ggor_1602, retro_ggor_1893, retro_ggor_1898, retro_ggor_2047, retro_ggor_2138, retro_ggor_236, retro_ggor_2569, retro_ggor_2597, retro_ggor_2709, retro_ggor_2745, retro_ggor_290, retro_ggor_2938, retro_ggor_356, retro_ggor_426, retro_ggor_566, retro_ggor_816,
Macaca mulatta ENSMMUG00000007433 ortholog_one2many 1 retrogene
retro_mmul_171,
Monodelphis domestica ENSMODG00000003096 ortholog_one2one 4 retrogenes
retro_mdom_1556, retro_mdom_1624, retro_mdom_1784, retro_mdom_615,
Mustela putorius furo ENSMPUG00000002526 possible_ortholog 9 retrogenes
retro_mputfur_1116, retro_mputfur_1279, retro_mputfur_1320, retro_mputfur_1367, retro_mputfur_1407, retro_mputfur_1445, retro_mputfur_1489, retro_mputfur_401, retro_mputfur_571,
Mus musculus ENSMUSG00000029614 possible_ortholog 13 retrogenes
retro_mmus_1264, retro_mmus_1336, retro_mmus_1898, retro_mmus_2684, retro_mmus_276, retro_mmus_3065, retro_mmus_3579, retro_mmus_3611, retro_mmus_3622, retro_mmus_3719, retro_mmus_445, retro_mmus_465, retro_mmus_730,
Nomascus leucogenys ENSNLEG00000027093 possible_ortholog 2 retrogenes
retro_nleu_1813, retro_nleu_43,
Oryctolagus cuniculus ENSOCUG00000003802 possible_ortholog 5 retrogenes
retro_ocun_129, retro_ocun_17, retro_ocun_189, retro_ocun_229, retro_ocun_245,
Pongo abelii ENSPPYG00000025855 ortholog_one2one 13 retrogenes
retro_pabe_1764, retro_pabe_1891, retro_pabe_2451, retro_pabe_2493, retro_pabe_2573, retro_pabe_2897, retro_pabe_3314, retro_pabe_358, retro_pabe_3677, retro_pabe_3725, retro_pabe_43, retro_pabe_472, retro_pabe_868,
Rattus norvegicus ENSRNOG00000025936 possible_ortholog 1 retrogene
retro_rnor_129,
Sarcophilus harrisii ENSSHAG00000007096 ortholog_one2many 2 retrogenes
retro_shar_506, retro_shar_536,
Ictidomys tridecemlineatus ENSSTOG00000009409 possible_ortholog 3 retrogenes
retro_itri_1024, retro_itri_1125, retro_itri_684,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_tsyr_291 72.55 52.43
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2. retro_tsyr_362 79.23 71.53
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3. retro_tsyr_364 86.21 100.00
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4. retro_tsyr_438 92.50 55.56
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5. retro_tsyr_477 65.33 52.08
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6. retro_tsyr_490 67.86 64.93
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7. retro_tsyr_566 92.80 86.46
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8. retro_tsyr_586 93.70 93.75
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9. retro_tsyr_626 76.51 56.94
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10. retro_tsyr_637 73.14 82.64
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11. retro_tsyr_774 83.03 95.83
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12. retro_tsyr_833 84.00 60.76
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13. retro_tsyr_894 68.04 100.00
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14. retro_tsyr_923 85.62 54.86
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15. retro_tsyr_1046 82.07 100.00
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16. retro_tsyr_1254 78.22 69.79
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17. retro_tsyr_1600 94.10 100.00
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18. retro_tsyr_1615 76.82 99.65
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19. retro_tsyr_2052 85.23 51.04
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20. retro_tsyr_2080 75.28 92.36
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21. retro_tsyr_2123 87.07 50.69
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22. retro_tsyr_2126 84.87 52.43
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Download FASTA sequences of all ENSTSYG00000009492 retrocopies