RetrogeneDB ID: | retro_tsyr_774 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_196386:2053..2874(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL6 | ||
Ensembl ID: | ENSTSYG00000009492 | ||
Aliases: | None | ||
Description: | ribosomal protein L6 [Source:HGNC Symbol;Acc:10362] |
Percent Identity: | 83.03 % |
Parental protein coverage: | 95.83 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAGEKVEKPNAKEKKPETKKADAGGKVKKGKLKAKKPKKGKPHCSRNPVLVRGIGRYSRSAMYSRKALYK |
MAGE..EKP..KEKKPE.K.ADA.GKVKKGKLKAKKPKKGKPHCS.NPVL.RGI.RYS.SAMYSRKALYK | |
Retrocopy | MAGERIEKPDTKEKKPEAKEADASGKVKKGKLKAKKPKKGKPHCSQNPVLTRGIRRYS*SAMYSRKALYK |
Parental | RKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHIRKL |
RKYSAAK.KV......K.LATVTKPVGG.KNGG..V.KL.KMPRYYPTEDVP.KLLS..KK.FSQHIRKL | |
Retrocopy | RKYSAAKYKVXXXXX-KFLATVTKPVGGGKNGGIQVAKLHKMPRYYPTEDVPQKLLSRDKKTFSQHIRKL |
Parental | RASITPGTILIILTGRHRGKR-VVFLKQLGSGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKVP |
.ASITP.TILIILTG.HRGK..VVFLKQLGSGLLLVTG.L..NRVPLR.THQKFVIATSTKIDISN.K.P | |
Retrocopy | QASITPRTILIILTGCHRGKG<VVFLKQLGSGLLLVTGSLIFNRVPLR-THQKFVIATSTKIDISNMKIP |
Parental | KHLTDAYFKKKQLRKPRHQEGEIFDTEKEKYEITEQRKIDQKAVDSQILPKIKAIPQLQGYLRSVFA |
KHLTDAYFKKK.L.KPRHQ.GEI.DT.KEKYEITEQ..IDQKAVDSQILPKIKAIPQLQG.LRSVFA | |
Retrocopy | KHLTDAYFKKKKLQKPRHQDGEILDTVKEKYEITEQCEIDQKAVDSQILPKIKAIPQLQGCLRSVFA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |