RetrogeneDB ID: | retro_hsap_1905 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 18:6462145..6463009(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000235552 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL6 | ||
Ensembl ID: | ENSG00000089009 | ||
Aliases: | RPL6, L6, SHUJUN-2, TAXREB107, TXREB1 | ||
Description: | ribosomal protein L6 [Source:HGNC Symbol;Acc:10362] |
Percent Identity: | 98.96 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MAGEKVEKPDTKEKKPEAKKVDAGGKVKKGNLKAKKPKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMYK |
MAGEKVEKPDTKEKKPEAKKVDAGGKVKKGNLKAKKPKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAM.K | |
Retrocopy | MAGEKVEKPDTKEKKPEAKKVDAGGKVKKGNLKAKKPKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAM*K |
Parental | RKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKL |
RKYSAAKSKVEKKKKEKVLA.VTKPVGGDKNGGTRVVKLRKMPR.YPTEDVPRKLLSHGKKPFSQHVRKL | |
Retrocopy | RKYSAAKSKVEKKKKEKVLAAVTKPVGGDKNGGTRVVKLRKMPR*YPTEDVPRKLLSHGKKPFSQHVRKL |
Parental | RASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPK |
RASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPK | |
Retrocopy | RASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPK |
Parental | HLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEITEQRKIDQKAVDSQILPKIKAIPQLQGYLRSVFALTNG |
HLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEITEQRKIDQKAVDSQILPKIKAIPQLQGYLRSVFALTNG | |
Retrocopy | HLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEITEQRKIDQKAVDSQILPKIKAIPQLQGYLRSVFALTNG |
Parental | IYPHKLVF |
IYPHKLVF | |
Retrocopy | IYPHKLVF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 2 .88 RPM | 476 .10 RPM |
bodymap2_adrenal | 5 .08 RPM | 699 .56 RPM |
bodymap2_brain | 1 .66 RPM | 206 .53 RPM |
bodymap2_breast | 3 .91 RPM | 440 .47 RPM |
bodymap2_colon | 5 .18 RPM | 761 .83 RPM |
bodymap2_heart | 0 .20 RPM | 153 .63 RPM |
bodymap2_kidney | 2 .30 RPM | 364 .93 RPM |
bodymap2_liver | 0 .46 RPM | 285 .99 RPM |
bodymap2_lung | 1 .69 RPM | 494 .64 RPM |
bodymap2_lymph_node | 2 .05 RPM | 800 .90 RPM |
bodymap2_ovary | 6 .52 RPM | 879 .55 RPM |
bodymap2_prostate | 2 .34 RPM | 824 .70 RPM |
bodymap2_skeletal_muscle | 0 .91 RPM | 237 .75 RPM |
bodymap2_testis | 2 .51 RPM | 394 .46 RPM |
bodymap2_thyroid | 2 .79 RPM | 557 .99 RPM |
bodymap2_white_blood_cells | 2 .07 RPM | 915 .35 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_68480 | 315 libraries | 379 libraries | 1029 libraries | 91 libraries | 15 libraries |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 9 .99 RPM |
CEU_NA11843 | 11 .91 RPM |
CEU_NA11930 | 11 .47 RPM |
CEU_NA12004 | 7 .22 RPM |
CEU_NA12400 | 8 .94 RPM |
CEU_NA12751 | 6 .41 RPM |
CEU_NA12760 | 10 .42 RPM |
CEU_NA12827 | 10 .85 RPM |
CEU_NA12872 | 7 .35 RPM |
CEU_NA12873 | 9 .35 RPM |
FIN_HG00183 | 10 .35 RPM |
FIN_HG00277 | 10 .13 RPM |
FIN_HG00315 | 6 .43 RPM |
FIN_HG00321 | 5 .35 RPM |
FIN_HG00328 | 6 .04 RPM |
FIN_HG00338 | 8 .86 RPM |
FIN_HG00349 | 8 .68 RPM |
FIN_HG00375 | 6 .43 RPM |
FIN_HG00377 | 6 .40 RPM |
FIN_HG00378 | 6 .80 RPM |
GBR_HG00099 | 7 .67 RPM |
GBR_HG00111 | 9 .61 RPM |
GBR_HG00114 | 7 .76 RPM |
GBR_HG00119 | 5 .94 RPM |
GBR_HG00131 | 5 .23 RPM |
GBR_HG00133 | 6 .15 RPM |
GBR_HG00134 | 5 .53 RPM |
GBR_HG00137 | 9 .73 RPM |
GBR_HG00142 | 6 .56 RPM |
GBR_HG00143 | 8 .84 RPM |
TSI_NA20512 | 11 .25 RPM |
TSI_NA20513 | 6 .75 RPM |
TSI_NA20518 | 7 .97 RPM |
TSI_NA20532 | 9 .46 RPM |
TSI_NA20538 | 8 .89 RPM |
TSI_NA20756 | 7 .62 RPM |
TSI_NA20765 | 4 .95 RPM |
TSI_NA20771 | 8 .57 RPM |
TSI_NA20786 | 5 .02 RPM |
TSI_NA20798 | 6 .17 RPM |
YRI_NA18870 | 6 .50 RPM |
YRI_NA18907 | 5 .41 RPM |
YRI_NA18916 | 4 .82 RPM |
YRI_NA19093 | 6 .14 RPM |
YRI_NA19099 | 5 .67 RPM |
YRI_NA19114 | 5 .22 RPM |
YRI_NA19118 | 9 .94 RPM |
YRI_NA19213 | 4 .88 RPM |
YRI_NA19214 | 3 .91 RPM |
YRI_NA19223 | 7 .52 RPM |