Parental gene: | HNRNPD, ENSVPAG00000004374 |
| Aliases: | None |
| Description: | heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa) [Source:HGNC Symbol;Acc:5036] |
| Organism: | Alpaca (Vicugna pacos) |
| Coordinates: | scaffold_7678:3758..7838(-) |
>ENSVPAG00000004374
AAAATGTTTATAGGAGGCCTTAGCTGGGACACTACAAAGAAAGATCTGAAGGACTACTTCTCCAAATTTGGTGAAGTCGT
AGACTGCACTCTGAAGTTAGATCCTATCACAGGGCGATCAAGGGGTTTTGGCTTTGTGCTATTTAAAGAGTCGGAGAGTG
TAGATAAGGTGATGGATCAGAAAGAACATAAACTGAATGGGAAGGTGATTGATCCTAAAAGGGCCAAAGCCATGAAAACA
AAAGAGCCTGTTAAAAAAATTTTTGTTGGTGGCCTTTCTCCAGATACACCTGAAGAGAAAATAAGGGAGTACTTTGGTGG
TTTTGGTGAGGTTGAATCCATAGAGCTCCCCATGGACAACAAGACCAATAAGAGGCGTGGATTCTGCTTTATTACCTTTA
AGGAAGAGGAACCAGTGAAGAAGATAATGGAAAAGAAATACCACAATGTTGGTCTTAGTAAATGTGAAATAAAAGTAGCC
ATGTCGAAGGAACAGTATCAGCAACAGCAGCAGTGGGGATCTAGAGGAGGATTCGCGGGAAGAGCACGTGGAAGAGGTGG
TGGCCCCAGTCAAAACTGGAACCAGGGATATAGTAACTATTGGAATCAAGGCTATGGCAACTATGGATATAACAGCCAAG
GTTACGGTGGTTATGGAGGATATGACTACACTGGTTACAACAACTACTATGGATATGGTGATTATAGCAACCAGCAGAGT
GGTTATGGGAAAGTATCCAGGCGAGGTGGTCATCAAAATAGCTACAAACCATACTAA
AAAATGTTTATAGGAGGCCTTAGCTGGGACACTACAAAGAAAGATCTGAAGGACTACTTCTCCAAATTTGGTGAAGTCGT
AGACTGCACTCTGAAGTTAGATCCTATCACAGGGCGATCAAGGGGTTTTGGCTTTGTGCTATTTAAAGAGTCGGAGAGTG
TAGATAAGGTGATGGATCAGAAAGAACATAAACTGAATGGGAAGGTGATTGATCCTAAAAGGGCCAAAGCCATGAAAACA
AAAGAGCCTGTTAAAAAAATTTTTGTTGGTGGCCTTTCTCCAGATACACCTGAAGAGAAAATAAGGGAGTACTTTGGTGG
TTTTGGTGAGGTTGAATCCATAGAGCTCCCCATGGACAACAAGACCAATAAGAGGCGTGGATTCTGCTTTATTACCTTTA
AGGAAGAGGAACCAGTGAAGAAGATAATGGAAAAGAAATACCACAATGTTGGTCTTAGTAAATGTGAAATAAAAGTAGCC
ATGTCGAAGGAACAGTATCAGCAACAGCAGCAGTGGGGATCTAGAGGAGGATTCGCGGGAAGAGCACGTGGAAGAGGTGG
TGGCCCCAGTCAAAACTGGAACCAGGGATATAGTAACTATTGGAATCAAGGCTATGGCAACTATGGATATAACAGCCAAG
GTTACGGTGGTTATGGAGGATATGACTACACTGGTTACAACAACTACTATGGATATGGTGATTATAGCAACCAGCAGAGT
GGTTATGGGAAAGTATCCAGGCGAGGTGGTCATCAAAATAGCTACAAACCATACTAA
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000015165 | ortholog_one2many | 1 retrogene | |
| Dipodomys ordii | ENSDORG00000012507 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000138668 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000026760 | ortholog_one2one | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000016483 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000016215 | ortholog_one2one | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000013312 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000010395 | ortholog_one2one | 3 retrogenes | |
| Tursiops truncatus | ENSTTRG00000007592 | ortholog_one2one | 1 retrogene | |
| Vicugna pacos | ENSVPAG00000010417 | within_species_paralog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_vpac_97 | 63.12 | 61.24 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_vpac_484 | 52.88 | 74.03 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSVPAG00000004374 retrocopies