Parental gene: | TCM_020494 |
| Aliases: | None |
| Description: | Ribonucleoside-diphosphate reductase small chain A isoform 2 |
| Organism: | Cacao (Theobroma cacao) |
| Coordinates: | 4:28823071..28828881(+) |
>TCM_020494
ATGGGATGGTTATTTCATATCGTGGCAGAAGGCCCACCTTACAATGAAAGCCCAAATCATTGGGCCCACACCACATTTAA
ACTTGAAAAAGAGAGAAAAAGACAATTGCAAAAAGTCCAAACGACGTCGTACGCACTTCAAATGAAGTTGAGCAATTGTA
AAAGCACTGTGGAACGATCCCCATGCAAAGGAAAAACAGAGAAAAAAACCAAAAGCGAAAAAATCTCGTTTTCTTCCCTA
TCACTGTCATACAACCTGTCGGTTTTTCAAGGAAGGGTTTTTGTAGGGTTTTTTTTATGCTTCTCCTCTTTCTCCGTTCA
AGCACTATACGTAAACCAAGATAAAAGGAGAAAAAGAAGTATGGGTTCCTTGAGAGATGAACAAGAAGGAGAAGAGGAAA
ACAAAGTAATGGAAAAAGAAGAAGAAAAGGAAGAGGAAGAGCCCATATTGAAAAAACAAAACCAGAGGTTTTGTATGTTT
CCCATTAGGTATCAGACACTTTGGGAGATGTACAAAAAGGCTGAGGCAAGTTTTTGGACAGCTGAGGAGGTTGATCTCTC
ACAAGATGTGCAGCACTGGGATGCCTTATCTAATTCAGAAAAACACTTCATAAGCCATGTGCTGGCATTTTTTGCGGCAT
CTGATGGCATAGTTTTGGAGAATTTGGCTGCCAGATTCCTAAATGATGTTCAAATTCCAGAGGCCCGGGCATTCTATGGA
TTTCAAATTGCAATGGAGAATATTCATTCTGAAATGTACAGTTTGCTTTTGGAGACATATATCAAGGATTCAAAAGAAAA
GCATAGATTGTTCAATGCTGTTGAAAGCATACCTTGTGTCAGTAAGAAGGCTAAGTGGGCTTTGGATTGGATTCAGAGTT
CCTCCTTGTTTGCAGAAAGACTTGTTGCTTTTGCTTGCGTTGAAGGGATCTTCTTTTCTGGAAGCTTTTGTTCAATATTC
TGGCTTAAAAAGAGGGGACTGATGCCAGGTTTGACATTCTCAAACGAGCTTATATCTAGAGATGAGGGCCTTCACTGTGA
CTTTGCTTGCCTTCTGTACGGTTTGTTGCAGAAACAACTTAAATGGCAAAAGGTCCATTGCATTGTTCATGAAGCAGTGG
AAATTGAGACTGAGTTCGTGTGTGAGGCTCTCCCATGTGCACTTATAGGCATGAACTCAACACTCATGAGCCAGTACATA
AAGTTTGTTGCTGATCATCTTTTGGTTGCATTGGGGTGTCAGAGAAAGTACAATGTGGAAAATCCATTTGATTGGATGGA
ATTTATATCTTTGCAAGGAAAAGCAAACTTCTTTGAGAGGAGGGTTGGTGATTATCAGAAAGCATCTGTTATGTCTAGCC
TTCAGAATGGTGGTAATAAAAACTATGTCTTCAAACTGGATGAAGACTTCTAA
ATGGGATGGTTATTTCATATCGTGGCAGAAGGCCCACCTTACAATGAAAGCCCAAATCATTGGGCCCACACCACATTTAA
ACTTGAAAAAGAGAGAAAAAGACAATTGCAAAAAGTCCAAACGACGTCGTACGCACTTCAAATGAAGTTGAGCAATTGTA
AAAGCACTGTGGAACGATCCCCATGCAAAGGAAAAACAGAGAAAAAAACCAAAAGCGAAAAAATCTCGTTTTCTTCCCTA
TCACTGTCATACAACCTGTCGGTTTTTCAAGGAAGGGTTTTTGTAGGGTTTTTTTTATGCTTCTCCTCTTTCTCCGTTCA
AGCACTATACGTAAACCAAGATAAAAGGAGAAAAAGAAGTATGGGTTCCTTGAGAGATGAACAAGAAGGAGAAGAGGAAA
ACAAAGTAATGGAAAAAGAAGAAGAAAAGGAAGAGGAAGAGCCCATATTGAAAAAACAAAACCAGAGGTTTTGTATGTTT
CCCATTAGGTATCAGACACTTTGGGAGATGTACAAAAAGGCTGAGGCAAGTTTTTGGACAGCTGAGGAGGTTGATCTCTC
ACAAGATGTGCAGCACTGGGATGCCTTATCTAATTCAGAAAAACACTTCATAAGCCATGTGCTGGCATTTTTTGCGGCAT
CTGATGGCATAGTTTTGGAGAATTTGGCTGCCAGATTCCTAAATGATGTTCAAATTCCAGAGGCCCGGGCATTCTATGGA
TTTCAAATTGCAATGGAGAATATTCATTCTGAAATGTACAGTTTGCTTTTGGAGACATATATCAAGGATTCAAAAGAAAA
GCATAGATTGTTCAATGCTGTTGAAAGCATACCTTGTGTCAGTAAGAAGGCTAAGTGGGCTTTGGATTGGATTCAGAGTT
CCTCCTTGTTTGCAGAAAGACTTGTTGCTTTTGCTTGCGTTGAAGGGATCTTCTTTTCTGGAAGCTTTTGTTCAATATTC
TGGCTTAAAAAGAGGGGACTGATGCCAGGTTTGACATTCTCAAACGAGCTTATATCTAGAGATGAGGGCCTTCACTGTGA
CTTTGCTTGCCTTCTGTACGGTTTGTTGCAGAAACAACTTAAATGGCAAAAGGTCCATTGCATTGTTCATGAAGCAGTGG
AAATTGAGACTGAGTTCGTGTGTGAGGCTCTCCCATGTGCACTTATAGGCATGAACTCAACACTCATGAGCCAGTACATA
AAGTTTGTTGCTGATCATCTTTTGGTTGCATTGGGGTGTCAGAGAAAGTACAATGTGGAAAATCCATTTGATTGGATGGA
ATTTATATCTTTGCAAGGAAAAGCAAACTTCTTTGAGAGGAGGGTTGGTGATTATCAGAAAGCATCTGTTATGTCTAGCC
TTCAGAATGGTGGTAATAAAAACTATGTCTTCAAACTGGATGAAGACTTCTAA
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Amborella trichopoda | AMTR_s00025p00110680 | ortholog_one2one | 1 retrogene | |
| Brassica rapa | Bra014962 | ortholog_one2one | 1 retrogene | |
| Prunus persica | PRUPE_ppa008063mg | ortholog_one2one | 1 retrogene | |
| Solanum lycopersicum | Solyc01g080210.2 | ortholog_one2one | 1 retrogene | |
| Vitis vinifera | VIT_05s0020g02560 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_tcac_4 | 75.38 | 69.15 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all TCM_020494 retrocopies