Parental gene: | scaffold_202963.1 |
| Aliases: | None |
| Description: | None |
| Organism: | Lyre-leaved rock-cress (Arabidopsis lyrata) |
| Coordinates: | 2:18820037..18823730(+) |
>scaffold_202963.1
ATGGGTAGGCACGAATACGATAGTTCCTCGGAGGAAGAAGAGAGAGCTAGAAGAAGGGATAGGAGAATACGAGAGAGAAG
CCCAGATGTTAGACGATCGAGGACGGAGACAGATGATGTTGCTCGTCGTGTTAGGGTTTCTGATGATGAGGACCATAAGA
GCTCGCGACGAGATCTTGAGATTGGTGGTGGTGAGAGGCGCCGTGGAGATAAGGTTAGAAAAGAGACTTCTTCCGATGAG
GAATTATCCAGGCGGTCGAGAAAGGATCGGAAAGAAGTAAACTCTGGTTCTGAGGATGATAGAGGTAAAAAAATTGAGGC
AGGTAGTGATGCTGATGGTGAGAGGAGGGTGAGTAAAGGGAAAAATAAGGATAGAGTTAGAGCTGACACTTCTTCTGATG
AAGAAGCAGATGATTCGAAGGGGAATAAAAAGGAAACTATGGAGGTTGAAGATGATTACGGTAGGAGTGGAAGGAGGAGA
AGCCCCAAAGTCATGGAGAAACATGGTAGAGAGAGAAGTCATAGGGGTAGTAGAGTCATAGCTGATAAACCTTCTGATGA
AGAAGATGATAGGCAGAGGAGCAGGGGAGGTAGGCGTGAAAGCGAGAGGAAGCGCAGGGATCATCGAGCATCTGACGACG
ACGAGGAAGGTGAGATTAGGAGTGAGAGAAAAGGAAAAGAGAGGAATGATAGAGGTAATGAAGGTCTCTTAAAGAGGGAT
CGGAGGGAGAGAGACTTGACTGATGGGCATGAGAATGGGAGTCGGCGTAGGGAAGTTGAAAGGAAAGATAGGAGTCGGAG
GGATGATGGAGTTAGAGATGAAAAAGAAAGGAGACACAATGATAGATATGATGATAGTCAAAGAGACAAGGCGAGAAAGG
AAGATAGCAGGAAAAGGGAAGAGAAGATTGAGGTTCCAAAGCCCAAGCTGGCAGAACTCAATCCATCTGAGAACAATGCT
ATGGCCTTGGGAAAAACAGGAGGAGTTTATATTCCTCCGTTCAAGCTAGCACGCATGATGAAGGAGGTGGAAGATAAGAG
CAGCGTAGAGTATCAACGGCTTACATGGGATGCTCTCCGTAAAAGTATTAATGGGCTCGTTAATAAGGTTAATGCAAGCA
ACATCAAGAACATAATCCCTGAACTGTTTGCTGAAAATCTCATCAGAGGAAGGGGACTTTTCTGCCGTTCATGTATGAAG
TCTCAAATGGCATCTCCTGGATTCACTGATGTCTTTGCAGCTTTAGTCGCTGTTATTAATGCCAAATTCCCTGAAGTTGC
TGAACTTCTATTGAAAAGGGTCATTTTGCAGCTAAAGAGAGCGTATAAGCGTAACGACAAGCCTCAATTGCTTGCTGCTG
TAAAATTTATAGCGCATCTAGTAAACCAGCAAGTCGCTGAGGAGATCATAGCACTTGAATTAGTCGAGGTACTTCTGGAT
GAGCCGACTGATGACAGTGTCGAGGTGGCTGTTGGGTTTGTGAGGGATTGTGGTGCGATGCTTCAAGACGTTACACCAAA
AGGATTGAATGGGATTTTTGAGCGGTTTCGTGGTATACTGCACGAGGGAGAGATAGATAAGAGAGTTCAGTATTTGATAG
AAAGTCTCCATGCTACTAGGAAGGCGAAATTTCAGGGATATCCGGCCGTTCGTCCTGAGCTAGATCTTGTTGAAGAAAAA
TATTCGCACGATCTCTCTCTTAATCAGGAAATTGATCCTGAAACTGCTCTTGATGTTTTCAAACCTGATCCTGACTTCGT
TGAGAACGAGAAGAAATATGAGGCGCTGAAGAAAGAGTTACTCGGTGACGAGGAGTCTGAGGATGACGATGGCTCTGATG
CTAGTTCAGAAGATAACGATGAGGATGAAGATGAATCTGATGAAGAAGATGAAGAACAAATGAGAATAAGAGACGAGACA
GAGACTAATCTTGTTAATCTTAGGAGGACAATCTACCTGACCATTATGTCCAGTGTTGATTTTGAGGAAGCAGGTCACAA
ATTACTTAAAATTAAGCTTGAACCAGGTCAAGAGATGGAACTATGCATAATGCTCCTGGAATGTTGCTCTCAGGAGAGAA
CCTATCTGCGGTACTATGGATTGTTGGGTCAGCGTTTCTGTATGATCAACAAAATTCATCAAGAGAATTTTGAGAAATGC
TTTGTTCAGCAGTATTCCATGATTCATCGTCTGGAGACAAACAAATTGCGTAACGTGGCTAAGTTTTTTGCCCATTTACT
GGGCACAGATGCTCTCCCCTGGCATGTGCTTGCCTACATTCGGTTAACCGAGGAGGACACAACTTCCTCATCTCGTATCT
TCATTAAGATCCTATTCCAGGAATTGTCAGAACACTTGGGGATTAGGCTGCTTAATGAGAGGCTTCAGGATCCAACAATG
CAGGAATCACTTGAATCTATCTTCCCTAAGGATAATCCAAAGAACACTAGGTTTGCAATCAACTTCTTTACATCCATTGG
TCTTGGAGGCATCACAGAGAATCTCAGAGAGTATCTGAAGAACATGCCAAGCCTCATCATGCAACAGCAGAAGCAAGTTG
CGGAATCAGAATCAGGATCATCATCTGGATCTGACAGTTCTGGTTCCGAGTCTGAATCTGAGTCAGACTCATCATCTTCT
TCTAGTTCGGATGAAAGCGACAGAGAGAAGAGGAAGCGAAGAAGAAGATCTTGA
ATGGGTAGGCACGAATACGATAGTTCCTCGGAGGAAGAAGAGAGAGCTAGAAGAAGGGATAGGAGAATACGAGAGAGAAG
CCCAGATGTTAGACGATCGAGGACGGAGACAGATGATGTTGCTCGTCGTGTTAGGGTTTCTGATGATGAGGACCATAAGA
GCTCGCGACGAGATCTTGAGATTGGTGGTGGTGAGAGGCGCCGTGGAGATAAGGTTAGAAAAGAGACTTCTTCCGATGAG
GAATTATCCAGGCGGTCGAGAAAGGATCGGAAAGAAGTAAACTCTGGTTCTGAGGATGATAGAGGTAAAAAAATTGAGGC
AGGTAGTGATGCTGATGGTGAGAGGAGGGTGAGTAAAGGGAAAAATAAGGATAGAGTTAGAGCTGACACTTCTTCTGATG
AAGAAGCAGATGATTCGAAGGGGAATAAAAAGGAAACTATGGAGGTTGAAGATGATTACGGTAGGAGTGGAAGGAGGAGA
AGCCCCAAAGTCATGGAGAAACATGGTAGAGAGAGAAGTCATAGGGGTAGTAGAGTCATAGCTGATAAACCTTCTGATGA
AGAAGATGATAGGCAGAGGAGCAGGGGAGGTAGGCGTGAAAGCGAGAGGAAGCGCAGGGATCATCGAGCATCTGACGACG
ACGAGGAAGGTGAGATTAGGAGTGAGAGAAAAGGAAAAGAGAGGAATGATAGAGGTAATGAAGGTCTCTTAAAGAGGGAT
CGGAGGGAGAGAGACTTGACTGATGGGCATGAGAATGGGAGTCGGCGTAGGGAAGTTGAAAGGAAAGATAGGAGTCGGAG
GGATGATGGAGTTAGAGATGAAAAAGAAAGGAGACACAATGATAGATATGATGATAGTCAAAGAGACAAGGCGAGAAAGG
AAGATAGCAGGAAAAGGGAAGAGAAGATTGAGGTTCCAAAGCCCAAGCTGGCAGAACTCAATCCATCTGAGAACAATGCT
ATGGCCTTGGGAAAAACAGGAGGAGTTTATATTCCTCCGTTCAAGCTAGCACGCATGATGAAGGAGGTGGAAGATAAGAG
CAGCGTAGAGTATCAACGGCTTACATGGGATGCTCTCCGTAAAAGTATTAATGGGCTCGTTAATAAGGTTAATGCAAGCA
ACATCAAGAACATAATCCCTGAACTGTTTGCTGAAAATCTCATCAGAGGAAGGGGACTTTTCTGCCGTTCATGTATGAAG
TCTCAAATGGCATCTCCTGGATTCACTGATGTCTTTGCAGCTTTAGTCGCTGTTATTAATGCCAAATTCCCTGAAGTTGC
TGAACTTCTATTGAAAAGGGTCATTTTGCAGCTAAAGAGAGCGTATAAGCGTAACGACAAGCCTCAATTGCTTGCTGCTG
TAAAATTTATAGCGCATCTAGTAAACCAGCAAGTCGCTGAGGAGATCATAGCACTTGAATTAGTCGAGGTACTTCTGGAT
GAGCCGACTGATGACAGTGTCGAGGTGGCTGTTGGGTTTGTGAGGGATTGTGGTGCGATGCTTCAAGACGTTACACCAAA
AGGATTGAATGGGATTTTTGAGCGGTTTCGTGGTATACTGCACGAGGGAGAGATAGATAAGAGAGTTCAGTATTTGATAG
AAAGTCTCCATGCTACTAGGAAGGCGAAATTTCAGGGATATCCGGCCGTTCGTCCTGAGCTAGATCTTGTTGAAGAAAAA
TATTCGCACGATCTCTCTCTTAATCAGGAAATTGATCCTGAAACTGCTCTTGATGTTTTCAAACCTGATCCTGACTTCGT
TGAGAACGAGAAGAAATATGAGGCGCTGAAGAAAGAGTTACTCGGTGACGAGGAGTCTGAGGATGACGATGGCTCTGATG
CTAGTTCAGAAGATAACGATGAGGATGAAGATGAATCTGATGAAGAAGATGAAGAACAAATGAGAATAAGAGACGAGACA
GAGACTAATCTTGTTAATCTTAGGAGGACAATCTACCTGACCATTATGTCCAGTGTTGATTTTGAGGAAGCAGGTCACAA
ATTACTTAAAATTAAGCTTGAACCAGGTCAAGAGATGGAACTATGCATAATGCTCCTGGAATGTTGCTCTCAGGAGAGAA
CCTATCTGCGGTACTATGGATTGTTGGGTCAGCGTTTCTGTATGATCAACAAAATTCATCAAGAGAATTTTGAGAAATGC
TTTGTTCAGCAGTATTCCATGATTCATCGTCTGGAGACAAACAAATTGCGTAACGTGGCTAAGTTTTTTGCCCATTTACT
GGGCACAGATGCTCTCCCCTGGCATGTGCTTGCCTACATTCGGTTAACCGAGGAGGACACAACTTCCTCATCTCGTATCT
TCATTAAGATCCTATTCCAGGAATTGTCAGAACACTTGGGGATTAGGCTGCTTAATGAGAGGCTTCAGGATCCAACAATG
CAGGAATCACTTGAATCTATCTTCCCTAAGGATAATCCAAAGAACACTAGGTTTGCAATCAACTTCTTTACATCCATTGG
TCTTGGAGGCATCACAGAGAATCTCAGAGAGTATCTGAAGAACATGCCAAGCCTCATCATGCAACAGCAGAAGCAAGTTG
CGGAATCAGAATCAGGATCATCATCTGGATCTGACAGTTCTGGTTCCGAGTCTGAATCTGAGTCAGACTCATCATCTTCT
TCTAGTTCGGATGAAAGCGACAGAGAGAAGAGGAAGCGAAGAAGAAGATCTTGA
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Brachypodium distachyon | BRADI4G39400 | ortholog_one2many | 1 retrogene | |
| Medicago truncatula | MTR_3g434840 | ortholog_one2many | 1 retrogene | |
| Sorghum bicolor | Sb03g029810 | ortholog_one2many | 1 retrogene | |
| Solanum lycopersicum | Solyc04g079920.2 | ortholog_many2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_alyr_10 | 77.08 | 61.76 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all scaffold_202963.1 retrocopies