RetrogeneDB ID: | retro_acar_30 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | GL343588.1:147295..147856(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSACAG00000001267 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSACAG00000001891 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 95.58 % |
Parental protein coverage: | 97.31 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHVVRGDFDENLNYPE |
LVLVLGDLHIPHRCNSLPAKFKKLL.PGKIQHILCTGN.CTKESYDYLKTLAGDVHVVRGDFDENLNYPE | |
Retrocopy | LVLVLGDLHIPHRCNSLPAKFKKLLFPGKIQHILCTGNHCTKESYDYLKTLAGDVHVVRGDFDENLNYPE |
Parental | QKVVTVGQFKIGLIHGHQVIPWGDVASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYSA |
QKVVTVGQFKIGLIHG.QVIPWGDVASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATG.YSA | |
Retrocopy | QKVVTVGQFKIGLIHGQQVIPWGDVASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGVYSA |
Parental | LENNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKS |
LENNIIPSFV.MDIQAST..TYVYQLIGD.VKVERIEYKKS | |
Retrocopy | LENNIIPSFVPMDIQASTIMTYVYQLIGDNVKVERIEYKKS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 4 .17 RPM | 154 .59 RPM |
SRP009831_brain | 0 .28 RPM | 115 .75 RPM |
SRP009831_dewlap | 0 .25 RPM | 53 .91 RPM |
SRP009831_embryo | 2 .64 RPM | 85 .03 RPM |
SRP009831_heart | 0 .10 RPM | 61 .58 RPM |
SRP009831_liver | 0 .16 RPM | 51 .45 RPM |
SRP009831_lung | 0 .25 RPM | 31 .68 RPM |
SRP009831_ovary | 0 .12 RPM | 47 .41 RPM |
SRP009831_skeletal_muscle | 0 .11 RPM | 15 .44 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000001891 | 1 retrocopy |
retro_acar_30 ,
|
Felis catus | ENSFCAG00000004135 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000006176 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000011577 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000011924 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000012049 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012756 | 4 retrocopies | |
Tursiops truncatus | ENSTTRG00000015090 | 2 retrocopies |