RetrogeneDB ID: | retro_fcat_165 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:100662492..100663031(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | VPS29 | ||
Ensembl ID: | ENSFCAG00000004135 | ||
Aliases: | None | ||
Description: | vacuolar protein sorting 29 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:14340] |
Percent Identity: | 75.14 % |
Parental protein coverage: | 96.77 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | VLVLGD-LHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPE |
VLV.GD.L..PH.CN.LPA.FKKLLVPGKIQ..LC.GNL..KESYDYLKT....V.IVRGD...NLNYPE | |
Retrocopy | VLVSGD<LYNPHWCNRLPATFKKLLVPGKIQPLLCPGNLWSKESYDYLKTQISEVRIVRGDVRGNLNYPE |
Parental | QKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNA |
QK..T..QF.IG...GH.VIPWG..ASLALL....DVDILISGHTHKFEAFEHENKFY.NPG.ATGA.NA | |
Retrocopy | QKGLTGRQFRIGWFPGHPVIPWGGTASLALLHSESDVDILISGHTHKFEAFEHENKFYVNPGPATGAHNA |
Parental | LETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKS |
LETN.IPSF.LMD.QAST.VTYV.QLIGDDVKV..IEYKKS | |
Retrocopy | LETNMIPSFMLMDSQASTAVTYV*QLIGDDVKVA*IEYKKS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 43 .15 RPM |
SRP017611_kidney | 0 .00 RPM | 73 .27 RPM |
SRP017611_liver | 0 .00 RPM | 34 .47 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000001891 | 1 retrocopy | |
Felis catus | ENSFCAG00000004135 | 2 retrocopies |
retro_fcat_165 , retro_fcat_848,
|
Loxodonta africana | ENSLAFG00000006176 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000011924 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012756 | 4 retrocopies | |
Tursiops truncatus | ENSTTRG00000015090 | 2 retrocopies |