RetrogeneDB ID: | retro_fcat_848 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:72713958..72714459(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | VPS29 | ||
Ensembl ID: | ENSFCAG00000004135 | ||
Aliases: | None | ||
Description: | vacuolar protein sorting 29 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:14340] |
Percent Identity: | 78.95 % |
Parental protein coverage: | 89.78 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | LVLVLGDLHIPHRCN-SLPAKFK-KLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNY |
LVLVLGDLHIP...N.SL...FK.KL.VPGK.QHILCTGNLC.KES.DYLKTL..DVH.VR.DF.ENLNY | |
Retrocopy | LVLVLGDLHIPYQSN>SLLPTFK>KLQVPGKSQHILCTGNLCPKES*DYLKTLVSDVHVVREDFNENLNY |
Parental | PEQKVVTVG-QFKIGLIHGHQVIPW-GDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATG |
PEQKVVTVG..FKI.LIHG..V..W.G..A.LALLQR.FDV.I.I..HTHKFEAFEHENKFY.N.GSATG | |
Retrocopy | PEQKVVTVG<HFKINLIHGYHVTLW<GNVATLALLQREFDVNIHILRHTHKFEAFEHENKFYNNSGSATG |
Parental | AYNALETNIIPSFVLMDIQASTVVTYVYQLI |
AYNALE.NIIPSFVLMDIQASTVVTYVYQLI | |
Retrocopy | AYNALEANIIPSFVLMDIQASTVVTYVYQLI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 43 .15 RPM |
SRP017611_kidney | 0 .00 RPM | 73 .27 RPM |
SRP017611_liver | 0 .00 RPM | 34 .47 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000001891 | 1 retrocopy | |
Felis catus | ENSFCAG00000004135 | 2 retrocopies |
retro_fcat_165, retro_fcat_848 ,
|
Loxodonta africana | ENSLAFG00000006176 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000011924 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012756 | 4 retrocopies | |
Tursiops truncatus | ENSTTRG00000015090 | 2 retrocopies |