RetrogeneDB ID: | retro_tbel_330 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_1790:359698..360099(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | VPS29 | ||
Ensembl ID: | ENSTBEG00000012756 | ||
Aliases: | None | ||
Description: | vacuolar protein sorting 29 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:14340] |
Percent Identity: | 66.67 % |
Parental protein coverage: | 72.43 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LKTLAGDVHIVRG-DFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTH |
..TLAGDV.IV.G.D..E.LNY.EQ.VVTVGQF.IGLI.G..VIPW.D.AS.A.L.RQFDVDILI.G..H | |
Retrocopy | IPTLAGDVCIVKG<DSSEKLNYLEQRVVTVGQFSIGLILGYHVIPWDDIASSAILKRQFDVDILIFGYEH |
Parental | KFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKS |
KFEA.E.ENKFY.NP....G...AL.TNII.S..LMDIQAS..VTYV.QLIGDD.KVE.I...K. | |
Retrocopy | KFEASEYENKFYSNPRFCHGGHDALGTNIISSLILMDIQASPGVTYVCQLIGDDRKVECIA*EKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000001891 | 1 retrocopy | |
Felis catus | ENSFCAG00000004135 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000006176 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000011924 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012756 | 4 retrocopies | |
Tursiops truncatus | ENSTTRG00000015090 | 2 retrocopies |