RetrogeneDB ID: | retro_amel_194 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192350.1:1855315..1856128(-) | ||
Located in intron of: | ENSAMEG00000017771 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNPS1 | ||
Ensembl ID: | ENSAMEG00000017861 | ||
Aliases: | None | ||
Description: | RNA binding protein S1, serine-rich domain [Source:HGNC Symbol;Acc:10080] |
Percent Identity: | 60.49 % |
Parental protein coverage: | 92.13 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 5 |
Parental | APSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSS |
APSPTK.KD..DEKSKD..K.KG..KE.S.KD..RDKT.K..S.....SSTR....S...S.SSTSTG.S | |
Retrocopy | APSPTKCKDHPDEKSKDHAKEKGIPKEWS-KDGDRDKTQKKYSPCKCGSSTR----SQCNSPSSTSTGLS |
Parental | SGSSSSSASSRSGSS-STSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKP-TK |
.GSSSSS.S...GSS.S.S.SS.SSSSS.S.S.S...HDNR.RSRSK..PPKRDEKER.....SP.P..K | |
Retrocopy | NGSSSSSVSNF*GSS<SMSYSSNSSSSSNSTSTSGCWHDNRQRSRSKPEPPKRDEKER--KNWSPSP>AK |
Parental | VHIGRLTRNVTKDHIMEIFSTYGKIK-MIDMPVE-RMHP-HLSKGYAYVEFENPDEAEKALKHMDGGQID |
V...RLTRNV.KDHI.EI.ST..KI...IDM.V.....P.HLSKGYAY.E.E.PDEA.K..K.MD.GQID | |
Retrocopy | VYTRRLTRNVSKDHITEILSTSEKIN<QIDMLVK<KLSP<HLSKGYAYMESEYPDEAKKVVKDMDEGQID |
Parental | GQEITATAVLAPWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRS |
GQEIT.T.VLA....PPP..FSPPRRMLPPPP.W..SP..MR..S.S.R......R..RSPG...H.S.S | |
Retrocopy | GQEITTTTVLA-YVAPPPWEFSPPRRMLPPPPTWH*SPLQMR*LS-SLRGSPLCARQCRSPGCCCHGSHS |
Parental | SSNSSR |
SSN.S. | |
Retrocopy | SSNPSQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017861 | 1 retrocopy |
retro_amel_194 ,
|
Bos taurus | ENSBTAG00000009969 | 7 retrocopies | |
Canis familiaris | ENSCAFG00000019397 | 1 retrocopy | |
Equus caballus | ENSECAG00000023288 | 1 retrocopy | |
Felis catus | ENSFCAG00000007690 | 1 retrocopy | |
Homo sapiens | ENSG00000205937 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000014275 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000008882 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000016808 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000019238 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000015891 | 1 retrocopy | |
Mus musculus | ENSMUSG00000034681 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000031582 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000008703 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000016951 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000013200 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000009098 | 8 retrocopies | |
Tarsius syrichta | ENSTSYG00000001629 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000008220 | 7 retrocopies |