RetrogeneDB ID: | retro_amel_305 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192379.1:3127348..3127636(+) | ||
Located in intron of: | ENSAMEG00000004889 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSAMEG00000007366 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 65.62 % |
Parental protein coverage: | 72.18 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GRGRGRGRGRGRGARGGKAEDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEV |
GR.RG.....G.G..G.K....EW.PVT.L.RLVKD.K..SLEE.YLF.LPIKESEII..FLG.S.KDEV | |
Retrocopy | GRPRGFCSRQGLGVHGSKTKEVEWMPVTSLCRLVKDIKFGSLEETYLFHLPIKESEIIEVFLGSSFKDEV |
Parental | LKIMPVQKQTRAGQRTRFKAFVAIGD |
LKIMP.QKQT.A...T.FK.FVAIGD | |
Retrocopy | LKIMPMQKQTHADRQTGFKTFVAIGD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000002549 | 1 retrocopy | |
Ailuropoda melanoleuca | ENSAMEG00000007366 | 1 retrocopy |
retro_amel_305 ,
|
Cavia porcellus | ENSCPOG00000011651 | 11 retrocopies | |
Macropus eugenii | ENSMEUG00000004508 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000016077 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000015213 | 5 retrocopies |