RetrogeneDB ID: | retro_cpor_1238 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_6:31707191..31707951(+) | ||
Located in intron of: | ENSCPOG00000000804 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000011651 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 59. % |
Parental protein coverage: | 93.14 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | GGRGGFRGGFGSGRARGGKA-EDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGTSL-K |
GG.G....G.G...A..GKA...KEWIPV.KLG.LVKD.KIK.L.EIYLFS.PI.ESEI.DF.L.T.L.K | |
Retrocopy | GGFGNSPQGQGRHQADSGKA<QAKEWIPVAKLGHLVKDGKIKFLKEIYLFSSPI*ESEITDFLLATPL<K |
Parental | DEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNK |
DEVLKI.PVQKQT..GQ....KA..A..D.NGH..L.VKCSKEV..A..GA.IL.K.S..P..RGY.GN. | |
Retrocopy | DEVLKITPVQKQTHTGQQASLKASIASED-NGHTVLDVKCSKEVVSAPWGATILPKSSTIPA*RGYRGND |
Parental | IGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAG-IDDCYTSARGCTATLGNFAKATFD |
I.KPHTVP...TG..GS.LV.L...PRG.G....PV..KLL.MAG......TS.......L.NF.KAT.D | |
Retrocopy | ISKPHTVP*TLTGHYGSALVYL-TLPRGSGDIPDPVSRKLLLMAGTVLTRATSLPRTVPPLDNFSKATLD |
Parental | AISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPAVATT |
A...T.S.L.PD.WKET.F...PYQEF.D..VKTH..VSVQR.QAPAV.TT | |
Retrocopy | A---TCSHLIPDFWKETAFATFPYQEFNDCSVKTHITVSVQRVQAPAVVTT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 223 .91 RPM |
SRP017611_kidney | 0 .00 RPM | 288 .62 RPM |
SRP017611_liver | 0 .00 RPM | 204 .01 RPM |
SRP040447_lung | 0 .00 RPM | 346 .71 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 660 .71 RPM |