RetrogeneDB ID: | retro_cpor_1469 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_9:21024187..21024698(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000011651 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 61.24 % |
Parental protein coverage: | 62.45 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 5 |
Parental | GKAEDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGTSLK-DEVLKIMPVQKQTRAGQR |
GKA..K..IPV.KLG.L.KD..I.SLEE.YL...P.KESE.I..FLG.SL...E.LKIM.VQKQT...Q. | |
Retrocopy | GKAKEKRLIPVIKLGHLDKDT-IMSLEESYLSCIPMKESEMINCFLGASLR<GEFLKIMSVQKQTHTAQK |
Parental | TRFKAF-VAIG-DYNGHV-GLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCK-VTGR |
TRFKA..VA.G.DYNGHV...GVK.SKEVATAI...IIL.KLSI.P..R..WGN.I...HT..CK.VT.. | |
Retrocopy | TRFKAL<VAMG<DYNGHV<CQGVKSSKEVATAILRIIILPKLSIIPI*RSHWGNNIYQLHTILCK<VTSH |
Parental | CGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTS |
CGSVL..L...P.GTGI.SAPV.KKL...A...DCY.S | |
Retrocopy | CGSVLACLLSPPGGTGIISAPVSKKLPLLAVTGDCYSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 223 .91 RPM |
SRP017611_kidney | 0 .00 RPM | 288 .62 RPM |
SRP017611_liver | 0 .00 RPM | 204 .01 RPM |
SRP040447_lung | 0 .00 RPM | 346 .71 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 660 .71 RPM |