Parental gene:

ENSCPOG00000011651

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_4:22049044..22051061(-)


>ENSCPOG00000011651
ATGGCGGATGACGCCGGTGCAGCGGGAGGGCCTGGAGGCCCTGGGGGCCCAGGTATGGGAGGCCGCGGCGGCTTCCGCGG
AGGCTTCGGAAGTGGCCGAGCTCGCGGCGGGAAGGCCGAGGACAAGGAGTGGATTCCTGTCACCAAGCTGGGCCGGCTGG
TCAAGGACATGAAGATCAAGTCCCTGGAAGAAATTTATCTCTTCTCCTTACCTATCAAGGAGTCTGAGATTATTGACTTT
TTCCTGGGCACATCCCTCAAGGATGAAGTCCTGAAGATCATGCCTGTGCAGAAGCAAACTCGTGCTGGCCAGCGGACCCG
GTTCAAGGCATTTGTCGCCATTGGGGACTACAACGGTCACGTTGGTCTGGGTGTAAAGTGTTCTAAGGAAGTAGCTACTG
CCATTCGTGGGGCCATCATCCTGGCCAAGCTCTCTATTGTTCCTGTGCGGAGAGGCTACTGGGGGAACAAGATTGGCAAG
CCCCACACAGTCCCTTGCAAGGTGACAGGCCGCTGTGGCTCTGTGTTAGTGCGTTTGATCCCTGCCCCCAGAGGCACTGG
CATTGTCTCAGCCCCTGTGCCCAAGAAGCTGCTGATGATGGCTGGTATTGATGACTGCTACACCTCTGCCAGGGGCTGTA
CTGCTACTTTGGGCAACTTCGCTAAGGCCACCTTTGATGCCATCTCAAAGACCTACAGCTACCTGACCCCTGATCTCTGG
AAAGAGACTGTGTTCACAAAGTCTCCTTATCAGGAGTTCACCGACCATCTTGTGAAAACCCACACTAGAGTCTCTGTCCA
GAGAACTCAAGCTCCAGCAGTAGCTACAACATAA

Library Parental gene expression (RPM)
SRP017611_liver 204 .01 RPM
SRP017611_kidney 288 .62 RPM
SRP017611_brain 223 .91 RPM
SRP040447_lung 346 .71 RPM
SRP040447_skeletal_muscle 660 .71 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000002549 ortholog_one2many 1 retrogene
retro_acar_57,
Ailuropoda melanoleuca ENSAMEG00000007366 possible_ortholog 1 retrogene
retro_amel_305,
Bos taurus ENSBTAG00000009535 possible_ortholog 7 retrogenes
retro_btau_1236, retro_btau_1420, retro_btau_1656, retro_btau_317, retro_btau_590, retro_btau_661, retro_btau_956,
Canis familiaris ENSCAFG00000019472 possible_ortholog 19 retrogenes
retro_cfam_1028, retro_cfam_1252, retro_cfam_1321, retro_cfam_1460, retro_cfam_1560, retro_cfam_1592, retro_cfam_1842, retro_cfam_1848, retro_cfam_1932, retro_cfam_1983, retro_cfam_2007, retro_cfam_2012, retro_cfam_2046, retro_cfam_2053, retro_cfam_2110, retro_cfam_271, retro_cfam_323, retro_cfam_490, retro_cfam_629,
Dipodomys ordii ENSDORG00000007375 possible_ortholog 18 retrogenes
retro_dord_163, retro_dord_206, retro_dord_215, retro_dord_284, retro_dord_392, retro_dord_445, retro_dord_465, retro_dord_499, retro_dord_500, retro_dord_505, retro_dord_568, retro_dord_571, retro_dord_572, retro_dord_683, retro_dord_703, retro_dord_711, retro_dord_723, retro_dord_89,
Equus caballus ENSECAG00000009065 possible_ortholog 7 retrogenes
retro_ecab_1025, retro_ecab_1105, retro_ecab_509, retro_ecab_632, retro_ecab_876, retro_ecab_892, retro_ecab_949,
Loxodonta africana ENSLAFG00000004696 possible_ortholog 11 retrogenes
retro_lafr_1072, retro_lafr_1092, retro_lafr_1103, retro_lafr_174, retro_lafr_284, retro_lafr_327, retro_lafr_376, retro_lafr_75, retro_lafr_801, retro_lafr_812, retro_lafr_917,
Macropus eugenii ENSMEUG00000004508 possible_ortholog 2 retrogenes
retro_meug_156, retro_meug_2103,
Monodelphis domestica ENSMODG00000016077 possible_ortholog 1 retrogene
retro_mdom_536,
Mus musculus ENSMUSG00000044533 possible_ortholog 1 retrogene
retro_mmus_148,
Procavia capensis ENSPCAG00000002090 possible_ortholog 2 retrogenes
retro_pcap_251, retro_pcap_433,
Pteropus vampyrus ENSPVAG00000016704 possible_ortholog 8 retrogenes
retro_pvam_1395, retro_pvam_1486, retro_pvam_221, retro_pvam_240, retro_pvam_34, retro_pvam_459, retro_pvam_521, retro_pvam_595,
Rattus norvegicus ENSRNOG00000014179 possible_ortholog 12 retrogenes
retro_rnor_1882, retro_rnor_2191, retro_rnor_2257, retro_rnor_2274, retro_rnor_2903, retro_rnor_438, retro_rnor_631, retro_rnor_681, retro_rnor_690, retro_rnor_809, retro_rnor_810, retro_rnor_878,
Sarcophilus harrisii ENSSHAG00000015213 possible_ortholog 5 retrogenes
retro_shar_186, retro_shar_288, retro_shar_456, retro_shar_525, retro_shar_783,
Tursiops truncatus ENSTTRG00000011393 possible_ortholog 12 retrogenes
retro_ttru_1341, retro_ttru_1346, retro_ttru_1414, retro_ttru_149, retro_ttru_1762, retro_ttru_1816, retro_ttru_37, retro_ttru_375, retro_ttru_419, retro_ttru_650, retro_ttru_719, retro_ttru_872,
Vicugna pacos ENSVPAG00000006867 possible_ortholog 6 retrogenes
retro_vpac_114, retro_vpac_164, retro_vpac_220, retro_vpac_354, retro_vpac_379, retro_vpac_518,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_19 91.34 83.39
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2. retro_cpor_177 73.08 73.65
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3. retro_cpor_437 57.94 81.23
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4. retro_cpor_718 68.06 75.09
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5. retro_cpor_769 65.61 54.87
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6. retro_cpor_808 64.50 70.76
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7. retro_cpor_1030 66.11 63.18
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8. retro_cpor_1238 59.00 93.14
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9. retro_cpor_1376 75.00 72.20
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10. retro_cpor_1469 61.24 62.45
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11. retro_cpor_1527 63.35 56.68
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Download FASTA sequences of all ENSCPOG00000011651 retrocopies