RetrogeneDB ID: | retro_cpor_718 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_25:9573727..9574351(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000011651 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.06 % |
Parental protein coverage: | 75.09 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 6 |
Parental | IPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGTS--LKDE-VLKIMPVQ-KQTRAGQRTRFKA |
IPVTKLG.LVKD.KIK.LEEI..FSLPIK.SE..DF...T...LK.E..LK.M..Q.KQT.AG..TRFK. | |
Retrocopy | IPVTKLGHLVKDRKIKILEEISFFSLPIKGSEMTDFTWATLTLLKNE<ILKMMSHQ<KQTHAGHWTRFKT |
Parental | FVAIGDYNGHVGLGVKCSKEVATAIRG-AIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRL |
FV.IG.YN.H..L..KCSKEVAT.I.G.AIILAKLS.VP..RG.WGNKI.K.HTVPC.VTG.CGS....L | |
Retrocopy | FVIIGGYNSHISLSIKCSKEVATDICG<AIILAKLSTVPMQRG*WGNKICKLHTVPCEVTGHCGSLWWCL |
Parental | IPAPRGTGIVSAPVPKKLLMMAG-IDDCYTSARGCTAT-LGNFAKATFDAIS-KTYSYLTPDLWKETVFT |
IPAPRGT.I.SAPVPKKLL..A..I.D.Y..A.GC.AT.LGNF.KA.FDAI..KTYSYLTPD..K.TVFT | |
Retrocopy | IPAPRGTVILSAPVPKKLLLLAA<INDHYPLANGCLAT<LGNFVKANFDAIT<KTYSYLTPDV*KKTVFT |
Parental | KSPYQE |
KS.YQ. | |
Retrocopy | KSHYQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 223 .91 RPM |
SRP017611_kidney | 0 .00 RPM | 288 .62 RPM |
SRP017611_liver | 0 .00 RPM | 204 .01 RPM |
SRP040447_lung | 0 .00 RPM | 346 .71 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 660 .71 RPM |