RetrogeneDB ID: | retro_amel_917 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192743.1:996395..997118(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAQ | ||
Ensembl ID: | ENSAMEG00000008618 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide [Source:HGNC Symbol;Acc:12854] |
Percent Identity: | 73.09 % |
Parental protein coverage: | 99.59 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 2 |
Parental | EKTELIQKAKLAKQAERYDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVGGRRSAWRVISSIEQKTDT |
EKTELI.KAK.A.QA...DDMA.C.K.V.E...ELSNEE.NLL..AYKNVV.G.RS.WRV..SIEQKT.. | |
Retrocopy | EKTELI*KAKVAEQADYHDDMAICVKTVMERATELSNEE*NLL*GAYKNVVRGHRSTWRVVWSIEQKT-- |
Parental | SDKKLQLIKDYREKVESELRSICTTVLELLDKYLIANATNPESKVFYLKMKGDYFRYLAEVACGDDRKQT |
SDKKL.LIKDY.EKVESELR.ICTTVL.LLDKYLIA.ATNPESKVFYLKMKGDYF.YL.EVACGDDR.QT | |
Retrocopy | SDKKL*LIKDYGEKVESELRLICTTVL*LLDKYLIASATNPESKVFYLKMKGDYFWYLTEVACGDDR*QT |
Parental | IDNSQGAYQEAFDISK-KEMQPTHPIRL-GLALNFSVFYYEILNNPELA--CTLAKTAFDEAIAELDTLN |
IDNSQG.YQE.FDISK.K...P..P..L.GLALNFSVF....L....L...CTL..TAFD.AIA.L..LN | |
Retrocopy | IDNSQGVYQEGFDISK>KSCNP--PLSLPGLALNFSVFTMRSLITQILPAHCTL-HTAFDKAIAQLGLLN |
Parental | EDSYKDSTLIMQLLRDNLT-LWTSDSAGEECDVAEGAEN |
.DSYKDSTLIMQLLRDNL..LWTSD.A.EE.D..EGAEN | |
Retrocopy | GDSYKDSTLIMQLLRDNLN<LWTSDTA-EEYDAKEGAEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000000328 | 1 retrocopy | |
Ailuropoda melanoleuca | ENSAMEG00000008618 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000011321 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000015359 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000005383 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000014740 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013534 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000010482 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000008104 | 5 retrocopies | |
Sorex araneus | ENSSARG00000012476 | 4 retrocopies |