Parental gene: | YWHAQ, ENSCPOG00000011321 |
| Aliases: | None |
| Description: | None |
| Organism: | Guinea Pig (Cavia porcellus) |
| Coordinates: | scaffold_75:7044343..7075180(-) |
>ENSCPOG00000011321
ATGGAGAAGACCGAGCTGATCCAGCGCTACGACGACATGGCCACCTGCATGAAGGCAGTGACCGAGCAGGGCGCCGAGCT
GTCCAACGAAGAGCGCAACCTGCTCTCGGTGGCCTACAAAAACGTGGTCGGGGGCCGCCGATCAGCCTGGAGGGTTATCT
CGAGCATCGAGCAGAAAACCGACACCTCTGACAAGAAGTTGCAGCTGATTAAGGACTATCGGGAGAAAGTGGAGTCGGAG
CTGCGATCCATCTGCACCACGGTCCTGGAACTGTTGGACAAGTATTTAATAGCCAATGCAACTAATCCAGAGAGTAAAGT
CTTCTATCTGAAAATGAAGGGTGATTACTTCCGATACCTTGCTGAAGTTGCATGTGGTGATGATCGAAAACAAACAATAG
ATAATTCCCAAGGAGCTTACCAAGAGGCATTTGATATAAGCAAGAAAGAGATGCAGCCCACACACCCCATCCGCCTGGGG
CTGGCTCTTAACTTCTCTGTATTTTATTATGAGATCCTTAATAACCCTGAGCTTGCCTGCACGCTGGCCAAAACGGCTTT
CGATGAGGCCATCGCAGAGCTTGATACACTGAATGAAGACTCCTACAAAGACAGCACTCTCATCATGCAGCTGCTCAGAG
ACAACTTAACATTATGGACATCAGACAGCGCAGGAGAAGAGTGTGATGCGGCGGAAGGGGCCGAGAACTGA
ATGGAGAAGACCGAGCTGATCCAGCGCTACGACGACATGGCCACCTGCATGAAGGCAGTGACCGAGCAGGGCGCCGAGCT
GTCCAACGAAGAGCGCAACCTGCTCTCGGTGGCCTACAAAAACGTGGTCGGGGGCCGCCGATCAGCCTGGAGGGTTATCT
CGAGCATCGAGCAGAAAACCGACACCTCTGACAAGAAGTTGCAGCTGATTAAGGACTATCGGGAGAAAGTGGAGTCGGAG
CTGCGATCCATCTGCACCACGGTCCTGGAACTGTTGGACAAGTATTTAATAGCCAATGCAACTAATCCAGAGAGTAAAGT
CTTCTATCTGAAAATGAAGGGTGATTACTTCCGATACCTTGCTGAAGTTGCATGTGGTGATGATCGAAAACAAACAATAG
ATAATTCCCAAGGAGCTTACCAAGAGGCATTTGATATAAGCAAGAAAGAGATGCAGCCCACACACCCCATCCGCCTGGGG
CTGGCTCTTAACTTCTCTGTATTTTATTATGAGATCCTTAATAACCCTGAGCTTGCCTGCACGCTGGCCAAAACGGCTTT
CGATGAGGCCATCGCAGAGCTTGATACACTGAATGAAGACTCCTACAAAGACAGCACTCTCATCATGCAGCTGCTCAGAG
ACAACTTAACATTATGGACATCAGACAGCGCAGGAGAAGAGTGTGATGCGGCGGAAGGGGCCGAGAACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 22 .20 RPM |
| SRP017611_kidney | 103 .95 RPM |
| SRP017611_brain | 74 .89 RPM |
| SRP040447_lung | 108 .75 RPM |
| SRP040447_skeletal_muscle | 18 .98 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000008618 | ortholog_one2one | 4 retrogenes | |
| Cavia porcellus | ENSCPOG00000008007 | other_paralog | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000020285 | within_species_paralog | 5 retrogenes | |
| Echinops telfairi | ENSETEG00000015359 | ortholog_one2one | 4 retrogenes | |
| Myotis lucifugus | ENSMLUG00000005383 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000014740 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000013534 | possible_ortholog | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000010482 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000008104 | possible_ortholog | 5 retrogenes | |
| Sorex araneus | ENSSARG00000012476 | ortholog_one2one | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cpor_135 | 62.32 | 56.36 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cpor_616 | 68.70 | 96.19 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cpor_668 | 96.57 | 98.31 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cpor_1463 | 56.05 | 64.83 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCPOG00000011321 retrocopies